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Sample GSM69710 Query DataSets for GSM69710
Status Public on Aug 16, 2005
Title Snell 22 month Dwarf Liver 3dw
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics Pit-1 mutant (Snell) resulting in long lived dwarf pheontype
Extracted molecule total RNA
Extraction protocol Approximately 10 mg of snap frozen liver was used to extract >25 ug of total RNA using Ambion's RNAqueous-4PCR RNA exstraction kit.
Label biotin
Label protocol Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Pit-1 mutant (Snell) resulting in long lived dwarf pheontype
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Aug 12, 2005
Last update date Aug 17, 2005
Contact name James H DeFord
E-mail(s) [email protected]
Phone 409-747-6817
Fax 409-772-9216
Organization name University of Texas at Galveston
Department Human Biological Chemistry and Genetics
Lab Dr. Papaconstantinou
Street address 301 University Blvd.
City Galveston
State/province TX
ZIP/Postal code 77555-0643
Country USA
 
Platform ID GPL81
Series (1)
GSE3129 Aging Liver Profiles of Long Lived Pit-1 Mutant Mouse (Snell) and Wild Type Controls

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 20.9 A 0.916408
AFFX-MurIL10_at 153.1 A 0.287743
AFFX-MurIL4_at 8.3 A 0.84329
AFFX-MurFAS_at 254.3 P 0.005565
AFFX-BioB-5_at 473.7 P 0.021902
AFFX-BioB-M_at 870.6 P 0.000225
AFFX-BioB-3_at 330.3 P 0.01667
AFFX-BioC-5_at 1423.8 P 0.00007
AFFX-BioC-3_at 1023.1 P 0.000052
AFFX-BioDn-5_at 1240.2 P 0.000095
AFFX-BioDn-3_at 6947 P 0.000095
AFFX-CreX-5_at 9611.1 P 0.000044
AFFX-CreX-3_at 20091.2 P 0.000044
AFFX-BioB-5_st 19.4 A 0.5
AFFX-BioB-M_st 30.5 A 0.804734
AFFX-BioB-3_st 54.4 A 0.712257
AFFX-BioC-5_st 16.8 A 0.937071
AFFX-BioC-3_st 15 A 0.910522
AFFX-BioDn-5_st 129.3 A 0.340661
AFFX-BioDn-3_st 168.3 A 0.313723

Total number of rows: 12488

Table truncated, full table size 321 Kbytes.




Supplementary data files not provided

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