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Sample GSM69714 Query DataSets for GSM69714
Status Public on Aug 16, 2005
Title Snell 6 month Wild Type Liver 84c
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics Wild Type Control for Pit-1 mutant (Snell) resulting in long lived dwarf pheontype
Extracted molecule total RNA
Extraction protocol Approximately 10 mg of snap frozen liver was used to extract >25 ug of total RNA using Ambion's RNAqueous-4PCR RNA exstraction kit.
Label biotin
Label protocol Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild Type Control for Pit-1 mutant (Snell) resulting in long lived dwarf pheontype
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Aug 12, 2005
Last update date Aug 17, 2005
Contact name James H DeFord
E-mail(s) [email protected]
Phone 409-747-6817
Fax 409-772-9216
Organization name University of Texas at Galveston
Department Human Biological Chemistry and Genetics
Lab Dr. Papaconstantinou
Street address 301 University Blvd.
City Galveston
State/province TX
ZIP/Postal code 77555-0643
Country USA
 
Platform ID GPL81
Series (1)
GSE3129 Aging Liver Profiles of Long Lived Pit-1 Mutant Mouse (Snell) and Wild Type Controls

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 34.9 A 0.824672
AFFX-MurIL10_at 174.7 A 0.156732
AFFX-MurIL4_at 40.8 A 0.686277
AFFX-MurFAS_at 355 P 0.01667
AFFX-BioB-5_at 478.8 P 0.010317
AFFX-BioB-M_at 741.1 P 0.000509
AFFX-BioB-3_at 282.1 A 0.116113
AFFX-BioC-5_at 1514.5 P 0.000258
AFFX-BioC-3_at 1210.6 P 0.000195
AFFX-BioDn-5_at 1137.7 P 0.000195
AFFX-BioDn-3_at 7538.4 P 0.000169
AFFX-CreX-5_at 11120 P 0.000044
AFFX-CreX-3_at 20512.6 P 0.000044
AFFX-BioB-5_st 131.9 A 0.262827
AFFX-BioB-M_st 27.1 A 0.686277
AFFX-BioB-3_st 73.9 A 0.804734
AFFX-BioC-5_st 32 A 0.937071
AFFX-BioC-3_st 14.4 A 0.804734
AFFX-BioDn-5_st 69.6 A 0.48511
AFFX-BioDn-3_st 167.9 A 0.327079

Total number of rows: 12488

Table truncated, full table size 321 Kbytes.




Supplementary data files not provided

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