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Sample GSM69719 Query DataSets for GSM69719
Status Public on Aug 16, 2005
Title Snell 6 month Dwarf Liver 87dw
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics Pit-1 mutant (Snell) resulting in long lived dwarf pheontype
Extracted molecule total RNA
Extraction protocol Approximately 10 mg of snap frozen liver was used to extract >25 ug of total RNA using Ambion's RNAqueous-4PCR RNA exstraction kit.
Label biotin
Label protocol Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Pit-1 mutant (Snell) resulting in long lived dwarf pheontype
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Aug 12, 2005
Last update date Aug 17, 2005
Contact name James H DeFord
E-mail(s) [email protected]
Phone 409-747-6817
Fax 409-772-9216
Organization name University of Texas at Galveston
Department Human Biological Chemistry and Genetics
Lab Dr. Papaconstantinou
Street address 301 University Blvd.
City Galveston
State/province TX
ZIP/Postal code 77555-0643
Country USA
 
Platform ID GPL81
Series (1)
GSE3129 Aging Liver Profiles of Long Lived Pit-1 Mutant Mouse (Snell) and Wild Type Controls

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 26.8 A 0.9273
AFFX-MurIL10_at 127.3 A 0.617401
AFFX-MurIL4_at 124 A 0.313723
AFFX-MurFAS_at 272.1 A 0.250796
AFFX-BioB-5_at 862.7 P 0.01667
AFFX-BioB-M_at 1243.6 P 0.000225
AFFX-BioB-3_at 708.6 P 0.018281
AFFX-BioC-5_at 2803 P 0.000147
AFFX-BioC-3_at 1660.6 P 0.000127
AFFX-BioDn-5_at 1942.6 P 0.00007
AFFX-BioDn-3_at 13988.8 P 0.00007
AFFX-CreX-5_at 16734.9 P 0.000044
AFFX-CreX-3_at 31002.8 P 0.000052
AFFX-BioB-5_st 282.7 A 0.195266
AFFX-BioB-M_st 218.1 A 0.5
AFFX-BioB-3_st 94.7 A 0.876428
AFFX-BioC-5_st 55.6 A 0.891021
AFFX-BioC-3_st 54.1 A 0.724854
AFFX-BioDn-5_st 310 A 0.205732
AFFX-BioDn-3_st 115.4 A 0.425962

Total number of rows: 12488

Table truncated, full table size 322 Kbytes.




Supplementary data files not provided

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