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Sample GSM72319 Query DataSets for GSM72319
Status Public on Nov 10, 2005
Title germ cell tumors (GCT) and normal controls 249A 1
Sample type RNA
 
Source name germ cell tumor
Organism Homo sapiens
Characteristics pure GCT (Choriocarcinoma)
Extracted molecule total RNA
Extraction protocol Frozen tissue from a germ cell tumor was minced and homogenized in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 12 ug of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Adult Male Germ Cell Tumor
Data processing RMA (robust multi-array)
 
Submission date Aug 29, 2005
Last update date Oct 12, 2005
Contact name James Korkola
E-mail(s) [email protected]
Phone 212-639-8281
Organization name Memorial Sloan-Kettering
Department Cell Biology
Lab Chaganti
Street address 1275 York Ave
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL97
Series (1)
GSE3218 Expression Profiling of Adult Male Germ Cell Tumors

Data table header descriptions
ID_REF
VALUE RMA-calculated Signal intensity

Data table
ID_REF VALUE
200000_s_at 9.718801771
200001_at 10.7341302
200002_at 11.83711893
200003_s_at 12.9814353
200004_at 11.01366058
200005_at 10.37457225
200006_at 11.43649085
200007_at 11.98404114
200008_s_at 10.37653825
200009_at 11.2072601
200010_at 12.10728593
200011_s_at 9.818551521
200012_x_at 12.81535129
200013_at 12.50171445
200014_s_at 10.09875812
200015_s_at 10.10483043
200016_x_at 11.82363948
200017_at 12.33357648
200018_at 13.15039797
200019_s_at 11.8471152

Total number of rows: 22645

Table truncated, full table size 492 Kbytes.




Supplementary file Size Download File type/resource
GSM72319.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM72319.EXP.gz 487 b (ftp)(http) EXP

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