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Sample GSM72380 Query DataSets for GSM72380
Status Public on Nov 10, 2005
Title germ cell tumors (GCT) and normal controls 593A 1
Sample type RNA
 
Source name germ cell tumor
Organism Homo sapiens
Characteristics pure GCT (Teratoma)
Extracted molecule total RNA
Extraction protocol Frozen tissue from a germ cell tumor was minced and homogenized in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 12 ug of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Adult Male Germ Cell Tumor
Data processing RMA (robust multi-array)
 
Submission date Aug 29, 2005
Last update date Oct 12, 2005
Contact name James Korkola
E-mail(s) [email protected]
Phone 212-639-8281
Organization name Memorial Sloan-Kettering
Department Cell Biology
Lab Chaganti
Street address 1275 York Ave
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL97
Series (1)
GSE3218 Expression Profiling of Adult Male Germ Cell Tumors

Data table header descriptions
ID_REF
VALUE RMA-calculated Signal intensity

Data table
ID_REF VALUE
200000_s_at 9.778850511
200001_at 10.75038735
200002_at 11.50130345
200003_s_at 12.41996901
200004_at 10.73448658
200005_at 10.16258536
200006_at 11.83116454
200007_at 11.85315449
200008_s_at 9.959744598
200009_at 11.49489436
200010_at 12.21850952
200011_s_at 10.43387783
200012_x_at 12.77915551
200013_at 12.59906139
200014_s_at 9.88917725
200015_s_at 10.27603329
200016_x_at 12.2104717
200017_at 12.27082535
200018_at 12.81805422
200019_s_at 11.51592743

Total number of rows: 22645

Table truncated, full table size 492 Kbytes.




Supplementary file Size Download File type/resource
GSM72380.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM72380.EXP.gz 365 b (ftp)(http) EXP

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