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Sample GSM72418 Query DataSets for GSM72418
Status Public on Nov 10, 2005
Title germ cell tumors (GCT) and normal controls 224A 2
Sample type RNA
 
Source name germ cell tumor
Organism Homo sapiens
Characteristics mixed GCT (Embryonal Carcinoma, Yolk Sac Tumor, Choriocarcinoma)
Extracted molecule total RNA
Extraction protocol Frozen tissue from a germ cell tumor was minced and homogenized in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 12 ug of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Adult Male Germ Cell Tumor
Data processing RMA (robust multi-array)
 
Submission date Aug 29, 2005
Last update date Oct 12, 2005
Contact name James Korkola
E-mail(s) [email protected]
Phone 212-639-8281
Organization name Memorial Sloan-Kettering
Department Cell Biology
Lab Chaganti
Street address 1275 York Ave
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL96
Series (1)
GSE3218 Expression Profiling of Adult Male Germ Cell Tumors

Data table header descriptions
ID_REF
VALUE RMA-calculated Signal intensity

Data table
ID_REF VALUE
1007_s_at 9.738253287
1053_at 8.22074489
117_at 9.742970898
121_at 9.129597702
1255_g_at 5.412414295
1294_at 8.150733535
1316_at 5.682377827
1320_at 5.748674989
1405_i_at 7.066202532
1431_at 4.640245942
1438_at 7.790928076
1487_at 7.895805253
1494_f_at 7.171453404
1598_g_at 10.31193117
160020_at 9.68277524
1729_at 8.064990611
177_at 6.565053153
1773_at 6.539467377
179_at 9.586759945
1861_at 6.961976646

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM72418.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM72418.EXP.gz 365 b (ftp)(http) EXP

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