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| Status |
Public on Sep 07, 2005 |
| Title |
Myotube (D3), chip HG-U133A |
| Sample type |
RNA |
| |
|
| Source name |
Myoblast, Muscle
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| Organism |
Mus musculus |
| Characteristics |
Strain:
|
| Growth protocol |
Culture conditions: Cultured in the presence of 2.5% horse serum.
|
| Extracted molecule |
total RNA |
| Label |
Biotin
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| |
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| Description |
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.scgp.ca:8080/StemBase/). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by Dr. Michael Rudnicki ([email protected]; 501 Smyth Road) for analysis.
Stembase Experiment ID: E103
Stembase Experiment ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=103
SCGP Sample ID: S49
SCGP Sample ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=103#SAMPLE_274
Short description: Myotube (D1-D3)
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| Data processing |
Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06
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| Submission date |
Sep 02, 2005 |
| Last update date |
Jan 19, 2006 |
| Organization |
Ottawa Hospital Research Institute |
| Phone |
(613) 737-8899 -73255
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| Department |
Cellular and Molecular Medicine
|
| Lab |
Ottawa Bioinformatics Core Facility
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| Street address |
501 Smyth Rd.
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| City |
Ottawa |
| State/province |
ON |
| ZIP/Postal code |
K1H 8L6 |
| Country |
Canada |
| |
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| Platform ID |
GPL96 |
| Series (1) |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
'signal' a measure of the abundance of a transcript. Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06. |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
2722.06 |
P |
0.00110197 |
| AFFX-BioB-M_at |
4091.27 |
P |
0.000169227 |
| AFFX-BioB-3_at |
3204.01 |
P |
0.000195116 |
| AFFX-BioC-5_at |
6663.53 |
P |
0.000195116 |
| AFFX-BioC-3_at |
5076.96 |
P |
9.4506e-05 |
| AFFX-BioDn-5_at |
4789.84 |
P |
9.4506e-05 |
| AFFX-BioDn-3_at |
37268.7 |
P |
0.00010954 |
| AFFX-CreX-5_at |
53473.9 |
P |
4.42873e-05 |
| AFFX-CreX-3_at |
100295 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
17.1048 |
A |
0.440646 |
| AFFX-DapX-M_at |
325.978 |
A |
0.108979 |
| AFFX-DapX-3_at |
29.8961 |
A |
0.949771 |
| AFFX-LysX-5_at |
172.284 |
A |
0.102165 |
| AFFX-LysX-M_at |
255.458 |
A |
0.544587 |
| AFFX-LysX-3_at |
35.9138 |
A |
0.39692 |
| AFFX-PheX-5_at |
30.7476 |
A |
0.804734 |
| AFFX-PheX-M_at |
35.4229 |
A |
0.824672 |
| AFFX-PheX-3_at |
65.5419 |
A |
0.804734 |
| AFFX-ThrX-5_at |
100.029 |
A |
0.686277 |
| AFFX-ThrX-M_at |
71.7957 |
A |
0.58862 |
Total number of rows: 22283
Table truncated, full table size 663 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM73025.CEL.gz |
3.3 Mb |
(ftp)(http) |
CEL |
| GSM73025.EXP.gz |
511 b |
(ftp)(http) |
EXP |
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