NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM733929 Query DataSets for GSM733929
Status Public on May 30, 2011
Title Primary MMTV-Neu Tumor N147
Sample type RNA
 
Source name Mouse Mammary Tumor
Organism Mus musculus
Characteristics strain: FvB
size: Mammary Tumor less than 1.0 cm diameter
tissue: Primary MMTV-Neu Mammary Tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Gene expression data from primary MMTV-Neu tumor
Data processing The data were normalised using quantile normalization with BeadStudio
 
Submission date May 29, 2011
Last update date May 30, 2011
Contact name Jeff Liu
E-mail(s) [email protected]
Phone 416-340-4800
Organization name University Health Network
Department Princess Margaret Cancer Center
Lab Zadeh Lab
Street address 101 College Street, RM 4-601
City Toronto
State/province Ontario
ZIP/Postal code M5G 1L7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE29616 Gene expression of primary MMTV-Neu tumors compared to secondary tumors generated from lin- and single tumor initiating cell (TIC) transplantation

Data table header descriptions
ID_REF
VALUE quantile normalized
N147 Detection Pval

Data table
ID_REF VALUE N147 Detection Pval
ILMN_2896528 9543.914 0
ILMN_2721178 2359.254 0
ILMN_3033922 2205.652 0
ILMN_3092673 9374.774 0
ILMN_2816356 196.6821 0.002506266
ILMN_2808939 1282.565 0
ILMN_2634564 1159.922 0
ILMN_2737647 124.3495 0.2857143
ILMN_2734484 1490.676 0
ILMN_2952292 384.1297 0
ILMN_2699078 109.5373 0.716792
ILMN_1213681 613.5873 0
ILMN_2735413 133.9996 0.1616541
ILMN_2735415 130.87 0.1904762
ILMN_2891688 884.1411 0
ILMN_2637698 1780.6 0
ILMN_2674228 425.4626 0
ILMN_2601546 129.617 0.2055138
ILMN_1230831 122.3499 0.3333333
ILMN_2848071 201.6071 0.001253133

Total number of rows: 25697

Table truncated, full table size 721 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap