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Sample GSM733940 Query DataSets for GSM733940
Status Public on May 30, 2011
Title Secondary MMTV-Neu Tumor WT620
Sample type RNA
 
Source name Mouse Mammary Tumor
Organism Mus musculus
Characteristics strain: FvB
size: Mammary Tumor less than 1.0 cm diameter
tissue: Secondary MMTV-Neu Mammary Tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Gene expression data from secondary MMTV-Neu tumor generated with a single TIC
Data processing The data were normalised using quantile normalization with BeadStudio
 
Submission date May 29, 2011
Last update date May 30, 2011
Contact name Jeff Liu
E-mail(s) [email protected]
Phone 416-340-4800
Organization name University Health Network
Department Princess Margaret Cancer Center
Lab Zadeh Lab
Street address 101 College Street, RM 4-601
City Toronto
State/province Ontario
ZIP/Postal code M5G 1L7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE29616 Gene expression of primary MMTV-Neu tumors compared to secondary tumors generated from lin- and single tumor initiating cell (TIC) transplantation

Data table header descriptions
ID_REF
VALUE quantile normalized
WT620 Detection Pval

Data table
ID_REF VALUE WT620 Detection Pval
ILMN_2896528 11831.2 0
ILMN_2721178 2724.497 0
ILMN_3033922 2305.707 0
ILMN_3092673 9201.886 0
ILMN_2816356 171.9438 0.0112782
ILMN_2808939 1287.327 0
ILMN_2634564 1100.993 0
ILMN_2737647 132.8956 0.1566416
ILMN_2734484 1052.745 0
ILMN_2952292 439.6252 0
ILMN_2699078 112.7068 0.6077694
ILMN_1213681 573.2128 0
ILMN_2735413 138.6287 0.1115288
ILMN_2735415 128.2478 0.2155388
ILMN_2891688 1206.552 0
ILMN_2637698 1545.5 0
ILMN_2674228 453.1568 0
ILMN_2601546 129.9555 0.1929825
ILMN_1230831 124.1337 0.2919799
ILMN_2848071 176.3257 0.005012531

Total number of rows: 25697

Table truncated, full table size 719 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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