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GEO accession:
Sample GSM738909
Query DataSets for GSM738909
Status
Public on Jun 09, 2011
Title
Control-pxt^EY03052-S12-Rep1
Sample type
RNA
Source name
stage12 follicle
Organism
Drosophila melanogaster
Characteristics
developmental stage: 12
tissue: follicle
gender: female
genotype: pxt^EY03052
Treatment protocol
Follicles of the stages and genotypes indicated were dissected in Grace's media.
Growth protocol
2-4 day old female flies were fed wet yeast for at least 36 hours prior to follicle dissections.
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
biotin
Label protocol
Performed by Johns Hopkins Microarray Faciltiy - 10ug RNA used to generate probe, no amplification
Hybridization protocol
Performed by Johns Hopkins Microarray Faciltiy - affymetrix Drosohila Genechip 2.0
Scan protocol
Performed by Johns Hopkins Microarray Faciltiy
Data processing
MAS5 data processing
Submission date
Jun 08, 2011
Last update date
Aug 28, 2018
Contact name
Tina Tootle
E-mail(s)
[email protected]
URL
http://www.anatomy.uiowa.edu/personnel.shtml?id=ttootle
Organization name
University of Iowa
Department
Anatomy and Cell Biology
Lab
Tootle Lab
Street address
51 Newton Rd, 1-500BSB
City
Iowa City
State/province
IA
ZIP/Postal code
52242
Country
USA
Platform ID
GPL1322
Series (1)
GSE29815
Drosophila Staged follicles
Relations
Reanalyzed by
GSE119084
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
484.417
P
4.42873e-05
AFFX-BioB-M_at
810.804
P
5.16732e-05
AFFX-BioB-3_at
499.964
P
4.42873e-05
AFFX-BioC-5_at
1345.61
P
8.14279e-05
AFFX-BioC-3_at
1240.71
P
4.42873e-05
AFFX-BioDn-5_at
2582.56
P
4.42873e-05
AFFX-BioDn-3_at
5608.93
P
6.02111e-05
AFFX-CreX-5_at
17840.3
P
5.16732e-05
AFFX-CreX-3_at
16591
P
4.42873e-05
AFFX-DapX-5_at
1.44111
A
0.699409
AFFX-DapX-M_at
15.7398
A
0.083592
AFFX-DapX-3_at
3.82136
A
0.834139
AFFX-LysX-5_at
2.97478
A
0.354441
AFFX-LysX-M_at
3.05457
A
0.883887
AFFX-LysX-3_at
8.93021
P
0.0125341
AFFX-PheX-5_at
7.19419
A
0.313723
AFFX-PheX-M_at
3.18678
A
0.724854
AFFX-PheX-3_at
4.91453
A
0.852082
AFFX-ThrX-5_at
9.00015
A
0.544587
AFFX-ThrX-M_at
3.67917
A
0.39692
Total number of rows:
18952
Table truncated, full table size
576 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM738909.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
GSM738909.CHP.gz
108.5 Kb
(ftp)
(http)
CHP
Processed data provided as supplementary file
Processed data included within Sample table
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