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Sample GSM74055 Query DataSets for GSM74055
Status Public on Sep 13, 2005
Title Aorta 3 hours chip C
Sample type RNA
 
Source name Aorta
Organism Rattus norvegicus
Characteristics aorta
Extracted molecule total RNA
Label Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, rev.3. 2001)
 
Description Isolation of rat DA and Ao. Rats were mated for 24 hours and the end of this period was marked as day zero of pregnancy. Near-term fetuses (gestational age, 19 days) were delivered by Cesarean section from a normoxic or hyperoxic dam, while newborns were used 3 hours after vaginal delivery. Pregnant rats were made hyperoxic to reproduce the neonatal condition in utero. They breathed 100% oxygen inside a box for 3 hours. All animals were killed by cervical dislocation and, to isolate the DA and Ao (arch and thoracic sections), were secured inside a chamber filled with ice-cold Krebs medium through which was bubbled a gas mixture with 2.5 (fetus) or 12.5% (newborn) oxygen. Special care was taken to obtain the blood vessels free of any adhering tissue.
Data processing Original Affymetrix output files
 
Submission date Sep 11, 2005
Last update date Sep 12, 2005
Contact name Flavio Coceani
E-mail(s) [email protected]
Phone +39 050 883327
Fax +39 050 883215
Organization name Scuola Superiore S. Anna
Department Settore di Scienze Mediche
Street address Piazza Martiri della Libertà, 33
City Pisa
ZIP/Postal code 56127
Country Italy
 
Platform ID GPL87
Series (1)
GSE3290 Expression profiling in perinatal Ductus Arteriosus (DA) and Aorta (Ao).

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Detection
DETECTION P-VALUE Detection P-Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 19.4 A 0.904333
AFFX-MurIL10_at 23 A 0.617401
AFFX-MurIL4_at 4.1 A 0.868639
AFFX-MurFAS_at 27.5 A 0.544587
AFFX-BioB-5_at 687 A 0.078002
AFFX-BioB-M_at 1151.9 P 0.000297
AFFX-BioB-3_at 396.3 P 0.006187
AFFX-BioC-5_at 1775.2 P 0.000169
AFFX-BioC-3_at 961.4 P 0.000754
AFFX-BioDn-5_at 1176.9 P 0.000297
AFFX-BioDn-3_at 7814 P 0.000127
AFFX-CreX-5_at 15482.3 P 0.000044
AFFX-CreX-3_at 29042 P 0.000044
AFFX-BioB-5_st 283.2 A 0.067678
AFFX-BioB-M_st 181.3 A 0.41138
AFFX-BioB-3_st 44.7 A 0.834139
AFFX-BioC-5_st 27.2 A 0.916408
AFFX-BioC-3_st 9.4 A 0.760937
AFFX-BioDn-5_st 83.6 A 0.382599
AFFX-BioDn-3_st 276.8 A 0.139482

Total number of rows: 8789

Table truncated, full table size 270 Kbytes.




Supplementary data files not provided

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