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GEO accession:
Sample GSM744690
Query DataSets for GSM744690
Status
Public on Sep 15, 2011
Title
B-cells
Sample type
genomic
Source name
pool B cells
Organism
Homo sapiens
Characteristics
cell type: B-cells
Extracted molecule
genomic DNA
Extraction protocol
Total DNA was isolated by standard procedures
Label
Cy3, Cy5
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description
B-cells
healthy sample
Data processing
BeadStudio software v3.2
Submission date
Jun 20, 2011
Last update date
Sep 15, 2011
Contact name
Agustin F Fernandez
E-mail(s)
[email protected]
,
[email protected]
Phone
985652411
Organization name
Oviedo University-HUCA
Department
IUOPA
Lab
Epigenetics
Street address
Avenida de Roma s/n
City
Oviedo
State/province
Asturias
ZIP/Postal code
33011
Country
Spain
Platform ID
GPL8490
Series (1)
GSE30090
A promoter DNA demethylation landscape of human hematopoietic differentiation
Data table header descriptions
ID_REF
VALUE
normalized Average Beta value
B-cells.Detection Pval
Data table
ID_REF
VALUE
B-cells.Detection Pval
cg00000292
0.8257
0
cg00002426
0.8557
0
cg00003994
0.0265
0
cg00005847
0
cg00006414
0.0375
0
cg00007981
0.0262
0
cg00008493
0.9712
0
cg00008713
0.0262
0
cg00009407
0.0091
0
cg00010193
0.5823
0
cg00011459
0.9358
0
cg00012199
0.0102
0
cg00012386
0.0192
0
cg00012792
0.0374
0
cg00013618
0.5042
0
cg00014085
0.0322
0
cg00014837
0.9135
0
cg00015770
0.1269
0
cg00016968
0.8526
0
cg00019495
0.2443
0
Total number of rows:
27578
Table truncated, full table size
535 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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