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Sample GSM74997 Query DataSets for GSM74997
Status Public on Oct 23, 2005
Title 129S6/SvEvTac pituitary gland rep1
Sample type RNA
 
Source name pituitary gland
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol pituitary glands were dissected from five 129S6/SvEvTac mice under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male 129S6/SvEvTac mouse pituitary gland
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Sep 19, 2005
Last update date Feb 27, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL81
Series (1)
GSE3327 Adult mouse gene expression

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE_LB 'detection p-value', negative log of the p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE_LB
100001_at 20.67 A 0.08
100002_at 33.31 A 0.75
100003_at 8.03 A 0.17
100004_at 109.45 A 0.59
100005_at 140.27 M 1.36
100006_at 13.65 A 0.24
100007_at 524.56 P 3.03
100009_r_at 582.94 P 3.36
100010_at 123.49 P 1.52
100011_at 168.09 P 2.49
100012_at 56.55 A 0
100013_at 148.5 P 1.52
100014_at 76.83 P 1.7
100015_at 40.59 P 1.2
100016_at 40.55 A 0.02
100017_at 72.75 M 0.49
100018_at 132.41 A 0.39
100019_at -1.57 A 0.79
100020_at 263.96 M 1.47
100021_at 16.36 A 0

Total number of rows: 12488

Table truncated, full table size 282 Kbytes.




Supplementary file Size Download File type/resource
GSM74997.CEL.gz 2.8 Mb (ftp)(http) CEL
GSM74997.EXP.gz 304 b (ftp)(http) EXP

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