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Sample GSM75004 Query DataSets for GSM75004
Status Public on Oct 23, 2005
Title C3H/HeJ pituitary gland rep2
Sample type RNA
 
Source name pituitary gland
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol pituitary glands were dissected from five C3H/HeJ mice under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male C3H/HeJ mouse pituitary gland
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Sep 19, 2005
Last update date Feb 27, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL81
Series (1)
GSE3327 Adult mouse gene expression

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE_LB 'detection p-value', negative log of the p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE_LB
100001_at 16.27 A 0.08
100002_at 17.13 A 0.19
100003_at 13.49 A 0.1
100004_at 128.22 A 0.92
100005_at 137.92 M 1.47
100006_at 2.55 A 0.1
100007_at 446.29 P 3.19
100009_r_at 449.64 P 3.36
100010_at 62.93 P 1.25
100011_at 137.41 P 3.11
100012_at 43.19 A 0.08
100013_at 229.2 P 2.79
100014_at 141.17 P 2.21
100015_at 53.9 A 0.96
100016_at 21.21 A 0.14
100017_at 51.83 P 1.15
100018_at 94.7 A 0.45
100019_at 2.62 A 0.24
100020_at 279.12 P 1.58
100021_at 16.52 A 0.06

Total number of rows: 12488

Table truncated, full table size 281 Kbytes.




Supplementary file Size Download File type/resource
GSM75004.CEL.gz 2.7 Mb (ftp)(http) CEL
GSM75004.EXP.gz 306 b (ftp)(http) EXP

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