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Sample GSM754538 Query DataSets for GSM754538
Status Public on Jul 07, 2011
Title blood 2g T1 ppC
Sample type RNA
 
Source name blood 2g T1 ppC
Organism Homo sapiens
Characteristics donor: C
Sex: M
tissue: blood
treatment: 2g APAP exposure
time: 1h
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the PAXgene Blood RNA kit (PreAnalytiX/Qiagen) according to the manufacturers protocol (including Dnase) and was globin reduced using the GLOBINclear kit (Ambion) according to the manufacturers protocol
Label biotin
Label protocol We used standard Affymetrix labeling protocols
 
Hybridization protocol We used standard Affymetrix hybridisation rotocols
Scan protocol We used standard Affymetrix scanning parameters
Description globin reduced total RNA
sample 2g APAP exposure
Data processing All samples were normalized by RMA algorithm and analyzed by SAM (FC>1.5 and FDR<10%).
 
Submission date Jul 05, 2011
Last update date Jul 07, 2011
Contact name marlon jetten
E-mail(s) [email protected]
Organization name maastricht university
Street address universiteitssingel 50
City Maastricht
ZIP/Postal code 6200MD
Country Netherlands
 
Platform ID GPL10526
Series (1)
GSE30418 Low dose human APAP exposure

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1_at 41.32674884
10_at 11.97855684
100_at 344.7876988
1000_at 24.32592966
10000_at 12.72112479
10001_at 134.9404706
10002_at 11.52504621
10003_at 5.70405004
10004_at 96.54883118
100048912_at 11.97189803
100049716_at 91.57378713
10005_at 197.9624153
10006_at 355.062493
10007_at 246.3131854
10008_at 457.5350785
10009_at 94.69049185
100093630_at 96.42478019
1001_at 14.14421757
10010_at 153.1660923
100101467_at 48.4406239

Total number of rows: 17788

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM754538_ppC_t1_HG-U133_Plus_2_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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