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Sample GSM762820 Query DataSets for GSM762820
Status Public on Jul 19, 2011
Title S66-expanded islet, RC treatment
Sample type RNA
 
Source name expanded islet, RC treatment
Organism Homo sapiens
Characteristics sample origin: Pancreatic Islets from individual donors
cell type: re-differentiated beta-cells
experiment batch: 2011-01-26
Growth protocol Redifferentiation Cocktail (RC) treatment consisted of 6 days in SFM supplemented with 25 mM D-glucose, N2 and B27 supplements (Stem Cell Technologies), 10 mM nicotinamide (Sigma), 8 nM exendin-4 (Acris), and 8 nM activin A (Peprotech), followed by 2 days in the same medium lacking activin A and containing a reduced glucose concentration (5.6 mM).
Extracted molecule total RNA
Extraction protocol according to the manufacturer's protocol (Trizol, Sigma-Aldrich)
Label biotin
Label protocol according to the manufacturer's protocol (Affymetrix, Santa Clara, CA, USA)
 
Hybridization protocol according to the manufacturer's protocol (Affymetrix, Santa Clara, CA, USA)
Scan protocol according to the manufacturer's protocol (Affymetrix, Santa Clara, CA, USA)
Description gene expression data of re-differentiation cells
Data processing Gene-level analyses was performed. RMA normalization, summarization by mean and batch effect removal, all were done by Partek Genomics suite (version 6.5) Copyright.
 
Submission date Jul 18, 2011
Last update date Jul 19, 2011
Contact name Metsada Pasmanik-Chor
E-mail(s) [email protected]
Organization name Tel Aviv University
Department Biology
Lab Bioinformatics Unit
Street address Ramat Aviv
City Tel Aviv
ZIP/Postal code 69978
Country Israel
 
Platform ID GPL6244
Series (1)
GSE30732 Insulin-producing cells generated from dedifferentiated human pancreatic beta cells expanded in vitro

Data table header descriptions
ID_REF
VALUE RMA-normalized

Data table
ID_REF VALUE
8157281 11.6355
7997332 25.4673
8072798 15.707
7972808 99.5743
8157283 313.484
7947375 14.3392
7972810 118.931
8097335 189.498
8047377 23.9376
7997336 128.625
8047379 318.422
8047381 454.054
8022856 112.67
8157300 79.6303
8072817 58.6483
7997346 69.659
8107348 38.1987
8157308 136.317
8107350 479.635
8072825 74.8603

Total number of rows: 32968

Table truncated, full table size 511 Kbytes.




Supplementary file Size Download File type/resource
GSM762820.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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