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Sample GSM7659789 Query DataSets for GSM7659789
Status Public on Oct 10, 2024
Title P28.Dataset_206604260001_R04C02
Sample type genomic
 
Source name 206604260001_R04C02
Organism Mus musculus
Characteristics age: 1.885
tissue: Muscle
female: 0
original.tissuedetailed: Muscle
conditiondetailed: Bulk Tissue (23 months)
sid: AI30 whole muscle
specieslatinname: Mus musculus
Extracted molecule genomic DNA
Extraction protocol not provided
Label Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina Protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Following data collection, the SeSaMe normalization method was used to define beta values for each probe (W. Zhou et al 2018. PMID: 30085201). If a CpG does not map to a given species, it takes a value of 0.5. The mammalian array design is similar to the Illumina Infinium 450K array but it contains fewer up to 37492 CpGs. Additional material on the mappability of CpGs can be found on the Github page https://github.com/shorvath/MammalianMethylationConsortium/ A vignette on using the mammal methylation array with SeSAMe is available from https://bioconductor.org/packages/release/bioc/vignettes/sesame/inst/doc/mammal.html.
The 'Normalized Data.csv' contains normalized (Sesame) Beta values
 
Submission date Jul 24, 2023
Last update date Oct 10, 2024
Contact name Steve Horvath
E-mail(s) [email protected]
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL32543
Series (1)
GSE238172 P28.ET0213, ET0318, ET0267 Datasets

Supplementary file Size Download File type/resource
GSM7659789_206604260001_R04C02_Grn.idat.gz 2.9 Mb (ftp)(http) IDAT
GSM7659789_206604260001_R04C02_Red.idat.gz 2.9 Mb (ftp)(http) IDAT
Processed data are available on Series record

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