|
| Status |
Public on Oct 10, 2024 |
| Title |
ET0318.Dataset_207505380016_R04C01 |
| Sample type |
genomic |
| |
|
| Source name |
207505380016_R04C01
|
| Organism |
Mus musculus |
| Characteristics |
age: 1.75
tissue: not provided
sid: ET031821moM3PBmix
specieslatinname: Mus musculus
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
not provided
|
| Label |
Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Standard Illumina Protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Data processing |
Following data collection, the SeSaMe normalization method was used to define beta values for each probe (W. Zhou et al 2018. PMID: 30085201). If a CpG does not map to a given species, it takes a value of 0.5. The mammalian array design is similar to the Illumina Infinium 450K array but it contains fewer up to 37492 CpGs. Additional material on the mappability of CpGs can be found on the Github page https://github.com/shorvath/MammalianMethylationConsortium/ A vignette on using the mammal methylation array with SeSAMe is available from https://bioconductor.org/packages/release/bioc/vignettes/sesame/inst/doc/mammal.html.
The 'Normalized Data.csv' contains normalized (Sesame) Beta values
|
| |
|
| Submission date |
Jul 24, 2023 |
| Last update date |
Oct 10, 2024 |
| Contact name |
Steve Horvath |
| E-mail(s) |
[email protected]
|
| Organization name |
University of California, Los Angeles
|
| Department |
Human Genetics
|
| Lab |
Horvath
|
| Street address |
695 Charles E. Young Drive South, Box 708822
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-7088 |
| Country |
USA |
| |
|
| Platform ID |
GPL32543 |
| Series (1) |
| GSE238172 |
P28.ET0213, ET0318, ET0267 Datasets |
|
