|
| Status |
Public on Jul 27, 2023 |
| Title |
SI_IEL_TRM_HC_R2 |
| Sample type |
SRA |
| |
|
| Source name |
Small Intestine CD8 T cells
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Small Intestine CD8 T cells
cell type: P14 CD8 T cells
genotype: C57/BL6
treatment: High cholesterol-containing diet for 7 days
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Ultra-low-input RNA Seq was performed on sort purified cells, polyadenylated mRNA was converted to cDNA. Illumina adapters were added and product was PCR amplified for sequencing
Immgen ULI-RNAseq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
Aligned with STAR 2.5.4a to mouse genome
Gene-level quantification calculated by featureCounts
Assembly: mm10
Supplementary files format and content: Gene counts by sample as an .xlsx file
|
| |
|
| Submission date |
Jul 25, 2023 |
| Last update date |
Jul 27, 2023 |
| Contact name |
Miguel Reina-Campos |
| E-mail(s) |
[email protected]
|
| Organization name |
La Jolla Institute for Immunology
|
| Lab |
Reina
|
| Street address |
9420 Athena Circle
|
| City |
La Jolla |
| State/province |
California |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE207044 |
Metabolic Programs of T Cell Tissue Residency Empower Tumor Immunity |
| GSE238249 |
Metabolic Programs of T Cell Tissue Residency Empower Tumor Immunity [RNA-seq II] |
|
| Relations |
| BioSample |
SAMN36707035 |
| SRA |
SRX21157812 |
