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GEO accession:
Sample GSM77016
Query DataSets for GSM77016
Status
Public on Oct 08, 2005
Title
Iso-4-4
Sample type
RNA
Source name
tracheal tissue
Organism
Mus musculus
Characteristics
Male 6-8 week BALB/c grafts in Male 6-8 week BALB/c host
Extracted molecule
total RNA
Extraction protocol
TRIzol w/ Qiagen RNeasy cleanup
Label
biotin
Label protocol
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Day 4 Isograft
Data processing
Bioconductor - GCRMA version 1.1.3
Submission date
Oct 05, 2005
Last update date
Jun 26, 2007
Contact name
Jeff Lande
E-mail(s)
[email protected]
Phone
612-625-5628
Organization name
University of Minnesota
Department
Medicine
Street address
420 Washington Avenue SE
City
Minneapolis
State/province
MN
ZIP/Postal code
55455
Country
USA
Platform ID
GPL339
Series (2)
GSE3418
Allograft versus isograft mouse heterotopic tracheal transplant grafts
GSE6095
Diagnosis of Acute Lung Rejection by Gene Expression Profiling of Bronchoalveolar Lavage Cells
Data table header descriptions
ID_REF
Affymetrix U430A probe set id
VALUE
GCRMA
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal(M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
1415670_at
8.822
P
0.000244
1415671_at
7.902
P
0.000732
1415672_at
9.195
P
0.000732
1415673_at
6.603
P
0.018555
1415674_a_at
7.612
P
0.000244
1415675_at
7.397
P
0.001221
1415676_a_at
9.653
P
0.000732
1415677_at
6.669
A
0.080566
1415678_at
7.555
P
0.001953
1415679_at
9.038
P
0.000244
1415680_at
7.655
P
0.00293
1415681_at
6.584
P
0.005859
1415682_at
5.842
P
0.010742
1415683_at
9.355
P
0.000244
1415684_at
6.428
P
0.001221
1415685_at
7.633
P
0.000244
1415686_at
8.726
P
0.000732
1415687_a_at
12.069
P
0.000244
1415688_at
8.252
P
0.000244
1415689_s_at
6.98
P
0.018555
Total number of rows:
22690
Table truncated, full table size
628 Kbytes
.
Supplementary data files not provided
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