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Sample GSM786817

Query DataSets for GSM786817

Status

Public on Feb 09, 2012

Title

V5-2

Sample type

genomic

Source name

Organism

Saccharomyces cerevisiae

Characteristics

strain: V5

Growth protocol

overnight YPD shaken culture 28C

Extracted molecule

genomic DNA

Extraction protocol

DNA extraction according to legras et al. 2003 FEMS microbiol letters.

Label

biotin

Label protocol

Winzeler (2003) Genetics

Hybridization protocol

Winzeler (2003) Genetics

Scan protocol

Affymetrix scanner

Description

analyzed strains

Data processing

Calculation of hybridization of each gene has been calculated according Robust Multiaray Averaging using affylmGUI package under R statistical environment. [log ratio was obtained for each gene for Eg8 in comparison to S288C and is provided as a Series supplementary file.]

Submission date

Aug 29, 2011

Last update date

Mar 14, 2014

Contact name

Jean-Luc Legras

E-mail(s)

[email protected]

Organization name

INRA

Department

UMR1083, Science pour l'Oenologie

Lab

Equipe Microbiologie - Physiologie Integrative

Street address

2, place Viala

City

Montpellier cedex1

ZIP/Postal code

34060

Country

France

Platform ID

GPL2529

Series (1)

GSE31703

Ecological success of a group of Saccharomyces cerevisiae / Saccharomyces kudriavzevii hybrids in the Northern European wine making environment.

Relations

Reanalyzed by

GSM1348606

Data table header descriptions
ID_REF
VALUE	RMA normalized

Data table
ID_REF	VALUE
1769308_at	5.28598893045983
1769309_at	0.630437585638788
1769310_at	2.56081837815520
1769311_at	5.1845335380771
1769312_at	5.51586849271032
1769313_at	4.98367028072279
1769314_at	5.01239887598467
1769315_at	0.718558620479465
1769316_s_at	0.508516930646816
1769317_at	5.22081581305067
1769318_at	0.724734534202287
1769319_at	5.24088710554792
1769320_at	4.70335765919568
1769321_at	1.99766193693641
1769322_s_at	11.4798722533605
1769323_at	4.34124406782059
1769324_at	4.57565770291189
1769325_at	4.6893496063694
1769326_at	0.710236033896403
1769327_at	0.784685981954786

Total number of rows: 10928

Table truncated, full table size 303 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM786817_JLS_V5-2_Y_2.CEL.gz	1.3 Mb	(ftp)(http)	CEL
Processed data included within Sample table
Processed data are available on Series record