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Sample GSM786819

Query DataSets for GSM786819

Status

Public on Feb 09, 2012

Title

U13-2

Sample type

genomic

Source name

U13

Organism

Saccharomyces cerevisiae

Characteristics

strain: U13

Growth protocol

overnight YPD shaken culture 28C

Extracted molecule

genomic DNA

Extraction protocol

DNA extraction according to legras et al. 2003 FEMS microbiol letters.

Label

biotin

Label protocol

Winzeler (2003) Genetics

Hybridization protocol

Winzeler (2003) Genetics

Scan protocol

Affymetrix scanner

Description

analyzed strains

Data processing

Calculation of hybridization of each gene has been calculated according Robust Multiaray Averaging using affylmGUI package under R statistical environment. [log ratio was obtained for each gene for Eg8 in comparison to S288C and is provided as a Series supplementary file.]

Submission date

Aug 29, 2011

Last update date

Mar 14, 2014

Contact name

Jean-Luc Legras

E-mail(s)

[email protected]

Organization name

INRA

Department

UMR1083, Science pour l'Oenologie

Lab

Equipe Microbiologie - Physiologie Integrative

Street address

2, place Viala

City

Montpellier cedex1

ZIP/Postal code

34060

Country

France

Platform ID

GPL2529

Series (1)

GSE31703

Ecological success of a group of Saccharomyces cerevisiae / Saccharomyces kudriavzevii hybrids in the Northern European wine making environment.

Relations

Reanalyzed by

GSM1348608

Data table header descriptions
ID_REF
VALUE	RMA normalized

Data table
ID_REF	VALUE
1769308_at	5.0574085751006
1769309_at	0.506739960663285
1769310_at	2.77664572330776
1769311_at	5.06035483741741
1769312_at	5.05055352792027
1769313_at	4.34757269868212
1769314_at	4.89760061321122
1769315_at	0.631583917322045
1769316_s_at	0.43537308212464
1769317_at	4.74683582540079
1769318_at	1.27703301245021
1769319_at	4.89756823160156
1769320_at	4.35776065113673
1769321_at	3.41419378813036
1769322_s_at	11.4695503341179
1769323_at	3.78577484610466
1769324_at	4.19059039770697
1769325_at	4.52739893416497
1769326_at	1.00590947945162
1769327_at	1.11678711352042

Total number of rows: 10928

Table truncated, full table size 302 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM786819_JLS_U13r_Y_2.CEL.gz	1.3 Mb	(ftp)(http)	CEL
Processed data included within Sample table
Processed data are available on Series record