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Sample GSM78874 Query DataSets for GSM78874
Status Public on Oct 28, 2005
Title fasted liver coconut fat diet 2
Sample type RNA
 
Source name liver
Organism Rattus norvegicus
Characteristics liver sample of Wistar rat fed for 12 weeks with coconut fat diet, after overnight fast
Extracted molecule total RNA
Extraction protocol Wistar rats were fasted overnight and killed by CO2. A piece of the reight venreal liver lobe was removed and clamp frozen. Total RNA was isolated from the clamp-frozen liver pieces using RNeasyR mini spin columns (Qiagen). The purified RNA was routinely checked for visible signs of degradation in a Bioanalyzer 2100 (Agilent Technologies, Palo Alto, USA), and only high quality RNA was processed.
Label biotin
Label protocol Approximately 3-5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver sample of Wistar rat fed for 12 weeks with coconut fat diet, after overnight fast
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Oct 20, 2005
Last update date Oct 26, 2005
Contact name Roland Buettner
E-mail(s) [email protected]
Phone 0049-941-944-7003
Fax 0049-041-944-7004
Organization name University of Regensburg
Department Internal Medicine I
Lab Endocrinology
Street address Franz-Josef-Strauss-Allee 11
City Regensburg
ZIP/Postal code 93042
Country Germany
 
Platform ID GPL1355
Series (1)
GSE3512 Fat-type specific effects of high fat diets

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1367452_at 779.4 P 0.000244
1367453_at 583.1 P 0.000244
1367454_at 527.8 P 0.000244
1367455_at 1050.9 P 0.000244
1367456_at 2658.5 P 0.000244
1367457_at 233 P 0.000244
1367458_at 241.9 P 0.001953
1367459_at 2534.8 P 0.000244
1367460_at 1288.5 P 0.000244
1367461_at 621.6 P 0.000244
1367462_at 858.4 P 0.001953
1367463_at 872.2 P 0.000244
1367464_at 240.6 P 0.000244
1367465_at 624.8 P 0.000244
1367466_at 459.7 P 0.000244
1367467_at 1045.5 P 0.000244
1367468_at 565.3 P 0.000732
1367469_at 2181 P 0.000244
1367470_at 465.4 P 0.000244
1367471_at 310.2 P 0.000244

Total number of rows: 31099

Table truncated, full table size 811 Kbytes.




Supplementary data files not provided

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