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Status
Public on Oct 22, 2005
Title
CA97-14B
Sample type
RNA
Source name
Frontal cortex brain tissue from HIVE-control patient
Organism
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Last update date
Mar 16, 2009
Contact name
Jennifer A Hammond
E-mail(s)
[email protected] Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
32.8
A
0.58862
AFFX-MurIL10_at
10.2
A
0.724854
AFFX-MurIL4_at
4.8
A
0.52976
AFFX-MurFAS_at
15.4
A
0.5
AFFX-BioB-5_at
478.7
P
0.000662
AFFX-BioB-M_at
1154.4
P
0.000225
AFFX-BioB-3_at
540.1
P
0.000225
AFFX-BioC-5_at
1642.7
P
0.000052
AFFX-BioC-3_at
1230.9
P
0.000052
AFFX-BioDn-5_at
1279
P
0.000052
AFFX-BioDn-3_at
6055.8
P
0.000044
AFFX-CreX-5_at
15525.3
P
0.000044
AFFX-CreX-3_at
18694.9
P
0.000044
AFFX-BioB-5_st
53
A
0.205732
AFFX-BioB-M_st
60.7
A
0.382599
AFFX-BioB-3_st
18.2
A
0.737173
AFFX-BioC-5_st
13.4
A
0.804734
AFFX-BioC-3_st
32
A
0.368438
AFFX-BioDn-5_st
112.9
A
0.147939
AFFX-BioDn-3_st
228
P
0.006871
12625 312 Kbytes .Supplementary data files not provided
