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Status
Public on Oct 22, 2005
Title
CA99-43A
Sample type
RNA
Source name
Frontal cortex brain tissue from HIVE-control patient
Organism
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Last update date
Mar 16, 2009
Contact name
Jennifer A Hammond
E-mail(s)
[email protected] Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
66.1
A
0.48511
AFFX-MurIL10_at
16.1
A
0.544587
AFFX-MurIL4_at
4.1
A
0.783476
AFFX-MurFAS_at
47.4
A
0.250796
AFFX-BioB-5_at
410.9
P
0.000754
AFFX-BioB-M_at
990.1
P
0.000225
AFFX-BioB-3_at
498.1
P
0.00039
AFFX-BioC-5_at
1442
P
0.00011
AFFX-BioC-3_at
1094.5
P
0.000052
AFFX-BioDn-5_at
1315.2
P
0.000081
AFFX-BioDn-3_at
6524.4
P
0.00006
AFFX-CreX-5_at
12795.5
P
0.000044
AFFX-CreX-3_at
18489.3
P
0.000044
AFFX-BioB-5_st
55.7
A
0.275146
AFFX-BioB-M_st
62.9
A
0.5
AFFX-BioB-3_st
43.4
A
0.804734
AFFX-BioC-5_st
12.3
A
0.916408
AFFX-BioC-3_st
46.4
A
0.382599
AFFX-BioDn-5_st
96.5
A
0.250796
AFFX-BioDn-3_st
108.9
A
0.262827
12625 312 Kbytes .Supplementary data files not provided
