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Status
Public on Oct 22, 2005
Title
CA99-43B
Sample type
RNA
Source name
Frontal cortex brain tissue from HIVE-control patient
Organism
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Last update date
Mar 16, 2009
Contact name
Jennifer A Hammond
E-mail(s)
[email protected] Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
45.1
A
0.41138
AFFX-MurIL10_at
7.2
A
0.794268
AFFX-MurIL4_at
3.1
A
0.824672
AFFX-MurFAS_at
21
A
0.368438
AFFX-BioB-5_at
307.4
P
0.004998
AFFX-BioB-M_at
589.4
P
0.000662
AFFX-BioB-3_at
300.5
P
0.004998
AFFX-BioC-5_at
956.8
P
0.000081
AFFX-BioC-3_at
746
P
0.000044
AFFX-BioDn-5_at
704.5
P
0.00011
AFFX-BioDn-3_at
4725.7
P
0.000081
AFFX-CreX-5_at
9125.6
P
0.000044
AFFX-CreX-3_at
12114.1
P
0.000044
AFFX-BioB-5_st
78.7
A
0.102165
AFFX-BioB-M_st
15.8
A
0.772364
AFFX-BioB-3_st
59.9
A
0.631562
AFFX-BioC-5_st
11
A
0.883887
AFFX-BioC-3_st
23.4
A
0.440646
AFFX-BioDn-5_st
104.1
A
0.185131
AFFX-BioDn-3_st
129.1
A
0.102165
12625 312 Kbytes .Supplementary data files not provided
