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Status
Public on Oct 22, 2005
Title
HA96-112A
Sample type
RNA
Source name
Frontal cortex brain tissue from HIVE patient
Organism
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Last update date
Mar 16, 2009
Contact name
Jennifer A Hammond
E-mail(s)
[email protected] Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
17.8
A
0.724854
AFFX-MurIL10_at
13.4
A
0.559354
AFFX-MurIL4_at
20.5
A
0.216524
AFFX-MurFAS_at
46.7
A
0.067678
AFFX-BioB-5_at
306.5
P
0.003212
AFFX-BioB-M_at
766.6
P
0.00034
AFFX-BioB-3_at
465.6
P
0.002556
AFFX-BioC-5_at
1205.5
P
0.00011
AFFX-BioC-3_at
937.8
P
0.000044
AFFX-BioDn-5_at
951.8
P
0.000127
AFFX-BioDn-3_at
5855.4
P
0.000081
AFFX-CreX-5_at
11476.4
P
0.000044
AFFX-CreX-3_at
14355.9
P
0.000044
AFFX-BioB-5_st
60.8
A
0.354453
AFFX-BioB-M_st
21.6
A
0.58862
AFFX-BioB-3_st
20.2
A
0.921998
AFFX-BioC-5_st
24.9
A
0.794268
AFFX-BioC-3_st
40.5
A
0.52976
AFFX-BioDn-5_st
69.3
A
0.354453
AFFX-BioDn-3_st
115.9
A
0.139482
12625 312 Kbytes .Supplementary data files not provided
