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Sample GSM79137

Query DataSets for GSM79137

Status

Public on Oct 21, 2005

Title

X136B04 (HG-U133A)

Sample type

RNA

Source name

Breast Tumor

Organism

Characteristics

Breast Tumor tissue

Extracted molecule

total RNA

Extraction protocol

Qiagen RNeasy Mini Kit

Label

biotin

Label protocol

Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets

Hybridization protocol

Standard Affymetrix procedure

Scan protocol

Standard Affymetrix procedure

Description

Series of 251 tumours

Data processing

Affymetrix Microarray Suite Version 5.0

Submission date

Oct 21, 2005

Last update date

Dec 14, 2005

Contact name

Lance David Miller

E-mail(s)

[email protected]

Phone

65 6478 8100

Fax

65 6478 9060

URL

http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7

Organization name

Genome Institute of Singapore

Department

Microarray and Expression Genomics

Street address

60 Bioplois Street, #02-01 Genome

City

Singapore

ZIP/Postal code

138672

Country

Singapore

Platform ID

Series (1)

An expression signature for p53 in breast cancer predicts mutation status, transcriptional effects, and patient survival

Data table header descriptions
ID_REF	Affy ID
VALUE	Raw data were normalized by using the global mean method. Probe-set signal values were natural log transformed and scaled by adjusting the mean intensity to a target signal value of log 500.
ABS_CALL	the call in an absolute analysis that indicates if the transcript was pressent (P). absent (A), marginal (M) or no call (NC)
DETECTION P-VALUE	the p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
212223_at	7.84230211947038	P	0.00287512549712787
204339_s_at	7.16521550503842	A	0.123405137319250
212356_at	7.16623602504569	A	0.163553459180572
212489_at	9.22296891853554	P	0.00164179881927007
208850_s_at	8.6077691825753	P	0.00164179881927007
208973_at	6.6067731610735	P	0.00630784729378275
210122_at	1.82301172411799	A	0.95473940454311
208174_x_at	7.59462944144488	P	0.00630784729378275
210255_at	6.54805347422182	P	0.00218062581216094
210388_at	4.16848122161013	A	0.922978176365498
207430_s_at	4.32116554001392	A	0.142524741492000
206872_at	5.77412465708901	A	0.394634090179955
207624_s_at	5.97074211639728	P	0.0102719017144531
213315_x_at	8.35963475856591	P	0.00287512549712787
219856_at	2.26057542571828	A	0.893841349203427
213509_x_at	8.0665467894104	P	0.0373956404974136
207818_s_at	2.09637727058223	A	0.70350996100991
200656_s_at	8.7756515515386	P	0.00164179881927007
217622_at	6.28020778614343	A	0.142524741492000
204916_at	6.79666809338813	P	0.0202308511531004

Total number of rows: 22283

Table truncated, full table size 1059 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM79137.CEL.gz	3.6 Mb	(ftp)(http)	CEL

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