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Sample GSM79140

Query DataSets for GSM79140

Status

Public on Oct 21, 2005

Title

X139B03 (HG-U133A)

Sample type

RNA

Source name

Breast Tumor

Organism

Characteristics

Breast Tumor tissue

Extracted molecule

total RNA

Extraction protocol

Qiagen RNeasy Mini Kit

Label

biotin

Label protocol

Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets

Hybridization protocol

Standard Affymetrix procedure

Scan protocol

Standard Affymetrix procedure

Description

Series of 251 tumours

Data processing

Affymetrix Microarray Suite Version 5.0

Submission date

Oct 21, 2005

Last update date

Dec 14, 2005

Contact name

Lance David Miller

E-mail(s)

[email protected]

Phone

65 6478 8100

Fax

65 6478 9060

URL

http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7

Organization name

Genome Institute of Singapore

Department

Microarray and Expression Genomics

Street address

60 Bioplois Street, #02-01 Genome

City

Singapore

ZIP/Postal code

138672

Country

Singapore

Platform ID

Series (1)

An expression signature for p53 in breast cancer predicts mutation status, transcriptional effects, and patient survival

Data table header descriptions
ID_REF	Affy ID
VALUE	Raw data were normalized by using the global mean method. Probe-set signal values were natural log transformed and scaled by adjusting the mean intensity to a target signal value of log 500.
ABS_CALL	the call in an absolute analysis that indicates if the transcript was pressent (P). absent (A), marginal (M) or no call (NC)
DETECTION P-VALUE	the p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
212223_at	7.73275934391298	P	0.00376320319539847
204339_s_at	6.60748347226953	A	0.360789939546055
212356_at	6.95723889746778	A	0.186499213720390
212489_at	6.58636714642296	M	0.0544047143115589
208850_s_at	6.80834071595389	P	0.0048898452144488
208973_at	7.00691795826558	P	0.00376320319539847
210122_at	2.31249787434382	A	0.87659486268075
208174_x_at	7.49278382632644	P	0.00807846014944036
210255_at	5.67362614145073	P	0.0250027490383783
210388_at	3.68744258407174	A	0.962604359502586
207430_s_at	2.38942509570131	A	0.81350078627961
206872_at	6.00584275371921	A	0.360789939546055
207624_s_at	5.83539283329158	P	0.00807846014944036
213315_x_at	8.27235592258579	P	0.00287512549712787
219856_at	3.62355906886781	A	0.87659486268075
213509_x_at	7.9313906862888	A	0.0907246701401557
207818_s_at	3.43783664318904	A	0.605365909820045
200656_s_at	8.16818437231689	P	0.00164179881927007
217622_at	6.41341052058199	A	0.238016683680144
204916_at	7.06190792928005	P	0.00218062581216094

Total number of rows: 22283

Table truncated, full table size 1057 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM79140.CEL.gz	3.5 Mb	(ftp)(http)	CEL

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