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Sample GSM79225 Query DataSets for GSM79225
Status Public on Oct 21, 2005
Title X224C93 (HG-U133A)
Sample type RNA
 
Source name Breast Tumor
Organism Homo sapiens
Characteristics Breast Tumor tissue
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets
 
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description Series of 251 tumours
Data processing Affymetrix Microarray Suite Version 5.0
 
Submission date Oct 21, 2005
Last update date Sep 23, 2011
Contact name Lance David Miller
E-mail(s) [email protected]
Phone 65 6478 8100
Fax 65 6478 9060
URL http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
Organization name Genome Institute of Singapore
Department Microarray and Expression Genomics
Street address 60 Bioplois Street, #02-01 Genome
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL96
Series (1)
GSE3494 An expression signature for p53 in breast cancer predicts mutation status, transcriptional effects, and patient survival
Relations
Reanalyzed by GSE31519

Data table header descriptions
ID_REF Affy ID
VALUE Raw data were normalized by using the global mean method. Probe-set signal values were natural log transformed and scaled by adjusting the mean intensity to a target signal value of log 500.
ABS_CALL the call in an absolute analysis that indicates if the transcript was pressent (P). absent (A), marginal (M) or no call (NC)
DETECTION P-VALUE the p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
212223_at 7.72354583762735 P 0.00376320319539847
204339_s_at 6.24446202998505 A 0.671997394915738
212356_at 7.40251765448936 P 0.0306843519290675
212489_at 7.78531280376302 P 0.00376320319539847
208850_s_at 7.61327938225247 P 0.00218062581216094
208973_at 6.06880444515885 A 0.0770218236345017
210122_at 2.4649132472262 A 0.95473940454311
208174_x_at 7.80062956195247 P 0.00630784729378275
210255_at 5.14627574060918 A 0.142524741492000
210388_at 4.66302820986519 A 0.909275329859844
207430_s_at 3.62670614126129 A 0.671997394915738
206872_at 6.02879425811048 A 0.360789939546055
207624_s_at 5.94601401940864 P 0.0162546647184098
213315_x_at 7.8693863972491 P 0.0102719017144531
219856_at 2.70466571753652 A 0.95473940454311
213509_x_at 8.05883963945185 M 0.0544047143115589
207818_s_at 1.93700097649286 A 0.836446540819428
200656_s_at 8.77782279861833 P 0.00164179881927007
217622_at 6.38826150933404 A 0.163553459180572
204916_at 6.72083674384941 P 0.0373956404974136

Total number of rows: 22283

Table truncated, full table size 1054 Kbytes.




Supplementary file Size Download File type/resource
GSM79225.CEL.gz 3.5 Mb (ftp)(http) CEL

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