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Sample GSM79487

Query DataSets for GSM79487

Status

Public on Oct 21, 2005

Title

X235C20 (HG-U133B)

Sample type

RNA

Source name

Breast Tumor

Organism

Characteristics

Breast Tumor tissue

Extracted molecule

total RNA

Extraction protocol

Qiagen RNeasy Mini Kit

Label

biotin

Label protocol

Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets

Hybridization protocol

Standard Affymetrix procedure

Scan protocol

Standard Affymetrix procedure

Description

Series of 251 tumours

Data processing

Affymetrix Microarray Suite Version 5.0

Submission date

Oct 21, 2005

Last update date

Dec 14, 2005

Contact name

Lance David Miller

E-mail(s)

[email protected]

Phone

65 6478 8100

Fax

65 6478 9060

URL

http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7

Organization name

Genome Institute of Singapore

Department

Microarray and Expression Genomics

Street address

60 Bioplois Street, #02-01 Genome

City

Singapore

ZIP/Postal code

138672

Country

Singapore

Platform ID

Series (1)

An expression signature for p53 in breast cancer predicts mutation status, transcriptional effects, and patient survival

Data table header descriptions
ID_REF	Affy ID
VALUE	Raw data were normalized by using the global mean method. Probe-set signal values were natural log transformed and scaled by adjusting the mean intensity to a target signal value of log 500.
ABS_CALL	the call in an absolute analysis that indicates if the transcript was pressent (P). absent (A), marginal (M) or no call (NC)
DETECTION P-VALUE	the p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
231623_at	6.2646853188532	A	0.163553459180572
225062_at	6.96984337080341	M	0.0452605954568895
244462_at	6.8309572664143	P	0.00807846014944036
231756_at	6.72145278396168	P	0.0250027490383783
225195_at	6.8939750467581	P	0.00376320319539847
244595_at	2.98166169464207	A	0.570706873792475
231889_at	5.88715670730345	A	0.123405137319250
225207_at	7.89328294371872	P	0.00164179881927007
224472_x_at	9.44137063255223	P	0.00218062581216094
244607_at	6.16530973677565	A	0.328002605084262
243784_s_at	3.81993007687547	A	0.535493689606536
238179_at	6.13890967424359	A	0.2664419661303
242361_at	6.43205312866419	A	0.163553459180572
242494_at	5.96945715717475	A	0.0649520508151722
223106_at	9.46340377509905	P	0.00164179881927007
223052_x_at	7.4082386200211	M	0.0452605954568895
242506_at	6.22527790007139	A	0.2664419661303
223239_at	8.47882924267852	P	0.00164179881927007
242639_at	5.70521108232104	A	0.0649520508151722
236078_at	6.53858544552811	A	0.142524741492000

Total number of rows: 22645

Table truncated, full table size 1056 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM79487.CEL.gz	3.4 Mb	(ftp)(http)	CEL

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