|
| Status |
Public on Nov 21, 2011 |
| Title |
CTM-S-replicate A |
| Sample type |
SRA |
| |
|
| Source name |
Chetumal, sugar fed
|
| Organism |
Aedes aegypti |
| Characteristics |
strain: Chetumal
feeding: sugar fed
tissue: whole body
|
| Treatment protocol |
sugar feeding or blood feeding
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
standard Illumina RNA-seq protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Description |
linked .bam file derived from A/B replicates
|
| Data processing |
Alignment: Sequence reads were obtained and mapped to the Aedes aegypti genome (Vectorbase AaegL1.2) using Bowtie (Langmead et al., 2009) . All reads mapping with two or fewer mismatches were retained.
Image data were processed using the Illumina Standard Pipeline
|
| |
|
| Submission date |
Sep 13, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Anthony James |
| E-mail(s) |
[email protected]
|
| Organization name |
University of California, Irvine
|
| Department |
Molecular Biology and Biochemistry
|
| Lab |
Anthony James
|
| Street address |
2315 McGaugh Hall
|
| City |
Irvine |
| State/province |
CA |
| ZIP/Postal code |
92697-3900 |
| Country |
USA |
| |
|
| Platform ID |
GPL11087 |
| Series (1) |
| GSE32074 |
The transcriptome of Aedes aegypti females from two strains (Chetumal and Rex-D Puerto Rico) either kept on a sugar diet or blood fed |
|
| Relations |
| SRA |
SRX096897 |
| BioSample |
SAMN00716780 |
