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Sample GSM79550

Query DataSets for GSM79550

Status

Public on Oct 21, 2005

Title

X303C36 (HG-U133B)

Sample type

RNA

Source name

Breast Tumor

Organism

Characteristics

Breast Tumor tissue

Extracted molecule

total RNA

Extraction protocol

Qiagen RNeasy Mini Kit

Label

biotin

Label protocol

Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets

Hybridization protocol

Standard Affymetrix procedure

Scan protocol

Standard Affymetrix procedure

Description

Series of 251 tumours

Data processing

Affymetrix Microarray Suite Version 5.0

Submission date

Oct 21, 2005

Last update date

Dec 14, 2005

Contact name

Lance David Miller

E-mail(s)

[email protected]

Phone

65 6478 8100

Fax

65 6478 9060

URL

http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7

Organization name

Genome Institute of Singapore

Department

Microarray and Expression Genomics

Street address

60 Bioplois Street, #02-01 Genome

City

Singapore

ZIP/Postal code

138672

Country

Singapore

Platform ID

Series (1)

An expression signature for p53 in breast cancer predicts mutation status, transcriptional effects, and patient survival

Data table header descriptions
ID_REF	Affy ID
VALUE	Raw data were normalized by using the global mean method. Probe-set signal values were natural log transformed and scaled by adjusting the mean intensity to a target signal value of log 500.
ABS_CALL	the call in an absolute analysis that indicates if the transcript was pressent (P). absent (A), marginal (M) or no call (NC)
DETECTION P-VALUE	the p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
231623_at	6.39423194951893	A	0.360789939546055
225062_at	7.86667026583871	P	0.0102719017144531
244462_at	6.32753615403015	P	0.0202308511531004
231756_at	6.94844625150563	P	0.0202308511531004
225195_at	5.97904071000556	A	0.0907246701401557
244595_at	5.25583603980876	A	0.464506310393464
231889_at	6.4534707996515	P	0.0373956404974136
225207_at	6.53288797214265	P	0.00376320319539847
224472_x_at	9.24883015069227	P	0.00164179881927007
244607_at	3.78982236559453	A	0.788661017052545
243784_s_at	5.64354545497032	A	0.186499213720390
238179_at	6.67359465672437	A	0.186499213720390
242361_at	6.1489408648546	A	0.394634090179955
242494_at	6.18811804291251	A	0.142524741492000
223106_at	9.26179715982409	P	0.00164179881927007
223052_x_at	6.48912456372914	A	0.211338982947455
242506_at	7.05533664802184	A	0.163553459180572
223239_at	8.71779115102062	P	0.00164179881927007
242639_at	5.53557757194608	A	0.360789939546055
236078_at	6.11390238930898	A	0.0770218236345017

Total number of rows: 22645

Table truncated, full table size 1051 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM79550.CEL.gz	3.2 Mb	(ftp)(http)	CEL

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