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Sample GSM79610 Query DataSets for GSM79610
Status Public on Oct 21, 2005
Title X8B87 (HG-U133B)
Sample type RNA
 
Source name Breast Tumor
Organism Homo sapiens
Characteristics Breast Tumor tissue
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets
 
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description Series of 251 tumours
Data processing Affymetrix Microarray Suite Version 5.0
 
Submission date Oct 21, 2005
Last update date Dec 14, 2005
Contact name Lance David Miller
E-mail(s) [email protected]
Phone 65 6478 8100
Fax 65 6478 9060
URL http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
Organization name Genome Institute of Singapore
Department Microarray and Expression Genomics
Street address 60 Bioplois Street, #02-01 Genome
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL97
Series (1)
GSE3494 An expression signature for p53 in breast cancer predicts mutation status, transcriptional effects, and patient survival

Data table header descriptions
ID_REF Affy ID
VALUE Raw data were normalized by using the global mean method. Probe-set signal values were natural log transformed and scaled by adjusting the mean intensity to a target signal value of log 500.
ABS_CALL the call in an absolute analysis that indicates if the transcript was pressent (P). absent (A), marginal (M) or no call (NC)
DETECTION P-VALUE the p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
231623_at 6.60448026053425 A 0.0907246701401557
225062_at 7.52943553401636 P 0.00807846014944036
244462_at 6.39778237204648 P 0.00807846014944036
231756_at 7.13072307467316 P 0.0162546647184098
225195_at 6.23860033915322 P 0.00376320319539847
244595_at 3.36862999214615 A 0.429293126207525
231889_at 6.13833497002256 P 0.0373956404974136
225207_at 6.44600792473097 P 0.00164179881927007
224472_x_at 8.62388187204704 P 0.00164179881927007
244607_at 6.24471988043468 A 0.29649003899009
243784_s_at 4.11740922076538 A 0.106158650796573
238179_at 5.95684036263643 A 0.394634090179955
242361_at 6.78345150850854 A 0.0649520508151722
242494_at 6.27560522431974 P 0.0162546647184098
223106_at 8.50098460418844 P 0.00164179881927007
223052_x_at 6.91217724143538 A 0.0649520508151722
242506_at 7.3429127687455 A 0.123405137319250
223239_at 7.83592161530355 P 0.00218062581216094
242639_at 4.85322675533341 M 0.0544047143115589
236078_at 6.45411626458334 A 0.211338982947455

Total number of rows: 22645

Table truncated, full table size 1056 Kbytes.




Supplementary file Size Download File type/resource
GSM79610.CEL.gz 3.4 Mb (ftp)(http) CEL

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