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Status
Public on Oct 27, 2005
Title
HA01-57B
Sample type
RNA
Source name
Frontal cortex brain tissue from HIVE patient
Organism
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 24, 2005
Last update date
Mar 16, 2009
Contact name
Jennifer A Hammond
E-mail(s)
[email protected] Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
5.7
A
0.804734
AFFX-MurIL10_at
8.2
A
0.852061
AFFX-MurIL4_at
2.1
A
0.941556
AFFX-MurFAS_at
14.1
A
0.5
AFFX-BioB-5_at
732.4
P
0.000297
AFFX-BioB-M_at
1693.6
P
0.000052
AFFX-BioB-3_at
899.1
P
0.00006
AFFX-BioC-5_at
1963.8
P
0.000044
AFFX-BioC-3_at
1626.8
P
0.000052
AFFX-BioDn-5_at
2571.4
P
0.000044
AFFX-BioDn-3_at
9092.4
P
0.000044
AFFX-CreX-5_at
22187.5
P
0.000044
AFFX-CreX-3_at
24753.4
P
0.000044
AFFX-BioB-5_st
19.2
A
0.455413
AFFX-BioB-M_st
36.8
A
0.559354
AFFX-BioB-3_st
29
A
0.645547
AFFX-BioC-5_st
7.7
A
0.932322
AFFX-BioC-3_st
9.6
A
0.559354
AFFX-BioDn-5_st
64.9
A
0.147939
AFFX-BioDn-3_st
200
P
0.003595
12625 311 Kbytes .Supplementary data files not provided
