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Sample GSM8112744 Query DataSets for GSM8112744
Status Public on Aug 02, 2024
Title P22 | 003 | TUMOUR
Sample type protein
 
Source name HNSCC
Organism Homo sapiens
Characteristics tissue: HNSCC
roi.x.coordinate: 0
roi.y.coordinate: 0
nuclei.count: 825
qc.flags: NA
bestresponse: SD
roi_qc: TRUE
slide_tissue_qc: TRUE
pathway: Carboplatin+Fluorouracil+CIVINF+Pembrolizumab
mortality: N
age: 68
Sex: Male
smokingstatus: Previous
pfs: 6 mos
lib_size: 6629.859091185
countofloweprgene: 13
percentofloweprgene: 16.8831168831169
foi: TUMOUR_SD
ruv_w1: -0.0667522882057515
ruv_w2: -0.00714228548065946
responsesintumour: SD
responsesintme: TUMOUR
Extracted molecule protein
Extraction protocol Clinical FFPE samples on individual slides were obtained with appropriate ethics approval
Label N/A
Label protocol DSP experiments were performed as per manufacturers DSP Slide Prep User Manual
 
Hybridization protocol DSP eluates were hybridised as per manufacturers instructions in nCounter Readout User Manual.
Scan protocol Hybridised samples were loaded into Nanostring prep station and processed as per DSP Slide Prep User Manual. N counter was performed with default parameters, and counts from Ncounter uploaded back to DSP instrument
Description norm_QC.csv
Data processing Counts were aligned and ERCC corrected automatically on the DSP instrument. This QC data was exported for analysis.
 
Submission date Feb 26, 2024
Last update date Aug 02, 2024
Contact name Habib Sadeghirad
E-mail(s) [email protected]
Phone 0451319292
Organization name The University of Queensland
Street address 37 Kent St, Woolloongabba, 37 Kent St, Woolloongabba
City Brisbane
State/province Queensland
ZIP/Postal code 4102
Country Australia
 
Platform ID GPL34246
Series (1)
GSE259280 Transcriptomic and proteomic spatial profiling of tertiary lymphoid aggregates in head and neck cancer reveal spatial tissue dynamics and profiles associated with immunotherapy response [protein]

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
CD8 12.81943745
CD4 12.10874789
GZMB 12.52724423
Fibronectin 14.15380784
Beta-2-microglobulin 11.56498202
S6 14.40302507
Rb IgG 10.86471566
PD-1 11.11077798
Histone H3 18.63302366
HLA-DR 12.8775697
CD3 10.95652146
Ms IgG2a 10.44104966
CD56 11.83936269
CD11c 11.83376599
CTLA4 10.34761038
GAPDH 16.0106316
Ms IgG1 10.65388502
CD68 12.91732263
PanCk 13.93716405
SMA 13.573394

Total number of rows: 77

Table truncated, full table size 1 Kbytes.




Supplementary data files not provided

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