|
| Status |
Public on Jun 03, 2024 |
| Title |
GS081.DAC |
| Sample type |
SRA |
| |
|
| Source name |
GS081
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: GS081
cell type: primary patient-derived gliomasphere
genotype: WT
treatment: 0.5uM Decitabine
time: 12 day
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was isolated using Zymo Research Quick DNA/RNA Miniprep Kit according to manufacturer’s protocol
stranded mRNA poly-A
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq X Plus |
| |
|
| Description |
GS081.DAC
|
| Data processing |
Reads were mapped to the Genome Reference Consortium Human Build 38 (GRCh38) reference genome using HISAT2
PCR duplicates were removed with RmDup in Picard
The gene level counts are generated by HTSeq-count
Assembly: GRCh38
Supplementary files format and content: combined matrix containing CPM
|
| |
|
| Submission date |
Mar 08, 2024 |
| Last update date |
Jun 03, 2024 |
| Contact name |
Thomas Jasper Lai |
| E-mail(s) |
[email protected]
|
| Phone |
7472286309
|
| Organization name |
University of California; Los Angeles
|
| Department |
Neurosurgery
|
| Lab |
Prins
|
| Street address |
Gonda Room 1554 695 Charles E. Young Dr.
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platform ID |
GPL34284 |
| Series (2) |
| GSE261187 |
Epigenetic priming induces cancer testis antigens and human endogenous retroviruses in glioma for enhanced T cell responses at single cell resolution (bulk RNA-Seq) |
| GSE261191 |
Epigenetic priming induces cancer testis antigens and human endogenous retroviruses in glioma for enhanced T cell responses at single cell resolution |
|
| Relations |
| BioSample |
SAMN40341438 |
| SRA |
SRX23885355 |
