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Sample GSM81449 Query DataSets for GSM81449
Status Public on Nov 03, 2005
Title 53/DP16, ghA44scan1.gpr
Sample type RNA
 
Channel 1
Source name DP16
Organism Gossypium hirsutum
Characteristics DP16, Biological Repl: 2, Technical repl: 2
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name 53
Organism Gossypium hirsutum
Characteristics 53, Biological Repl: 2, Technical repl: 2
Extracted molecule total RNA
Label Cy3
 
 
Description 0 dpa ovule comparisons
Biological Replicate: 2, Technical Replicate: 2, Dye Swapped: true
Data processing Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
 
Submission date Nov 01, 2005
Last update date Nov 02, 2005
Contact name Andrew Spriggs
E-mail(s) [email protected]
Phone 612-6246-5193
Organization name CSIRO Plant Industry
Department Bioinformatics Group
Street address GPO Box 1600
City Canberra
State/province ACT
ZIP/Postal code 2601
Country Australia
 
Platform ID GPL3035
Series (1)
GSE3546 Cotton ovule development

Data table header descriptions
ID_REF
VALUE Normalized log2 ratio of medians defined as CH1 divided by CH2
BACK_TRANSFORM_VALUE Ratio of medians defined as CH1 divided by CH2 back transformed from normalised log
CH1_FG Channel 1 median feature pixel intensity (635nm)
CH1_BG Channel 1 median feature background intensity
CH2_FG Channel 2 median feature pixel intensity (532nm)
CH2_BG Channel 2 median feature background intensity
RATIO Unnormalized, untransformed ratio of medians (Ch1/Ch2 in unswapped sample, Ch2/Ch1 in swapped sample)
FLAG the type of flag associated with a feature. 0 denotes satisfactory features, <0 denotes un-satisfactory features that were excluded from normalisation and analysis

Data table
ID_REF VALUE BACK_TRANSFORM_VALUE CH1_FG CH1_BG CH2_FG CH2_BG RATIO FLAG
SP0000026113 -0.0837652 0.9435918 105.0 30.0 142.0 97.0 1.352381 0
SP0000026114 0.3516672 1.2760344 165.0 29.0 205.0 97.0 1.2424242 0
SP0000026115 -0.136898 0.9094725 739.0 29.0 586.0 99.0 0.7929635 0
SP0000026116 0.2934043 1.2255287 704.0 30.0 755.0 97.0 1.0724432 0
SP0000026117 -0.0306574 0.9789741 1198.0 29.0 772.0 97.0 0.6444073 0
SP0000026118 -0.4057941 0.7548207 524.0 29.0 365.0 99.0 0.6965649 0
SP0000026119 0.0598808 1.0423797 1943.0 31.0 1592.0 98.0 0.8193515 0
SP0000026120 0.8431135 1.7939175 1649.0 29.0 2128.0 99.0 1.2904791 0
SP0000026121 -0.0938604 0.9370121 111.0 29.0 151.0 98.0 1.3603604 0
SP0000026122 -0.0563839 0.9616715 2057.0 30.0 1438.0 96.0 0.6990763 0
SP0000026123 0 1 149.0 30.0 181.0 98.0 1.2147651 0
SP0000026124 -0.2810202 0.8230088 120.0 29.0 143.0 96.0 1.1916667 0
SP0000026125 -0.2415856 0.8458152 6160.0 30.0 3548.0 96.0 0.575974 0
SP0000026126 0.3693463 1.2917674 2593.0 29.0 2564.0 98.0 0.988816 0
SP0000026127 -0.0642837 0.9564201 223.0 29.0 238.0 99.0 1.0672646 0
SP0000026128 0.0655755 1.0465023 2098.0 30.0 1582.0 97.0 0.7540515 0
SP0000026129 -0.1213009 0.9193583 1439.0 28.0 1060.0 101.0 0.7366227 0
SP0000026130 0.1185104 1.0856134 1155.0 29.0 1010.0 98.0 0.8744589 0
SP0000026131 0 1 2861.0 30.0 2012.0 100.0 0.7032506 0
SP0000026132 -0.2784182 0.8244945 743.0 29.0 507.0 103.0 0.6823688 0

Total number of rows: 10584

Table truncated, full table size 695 Kbytes.




Supplementary data files not provided
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