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Sample GSM81453 Query DataSets for GSM81453
Status Public on Nov 03, 2005
Title fl/Xu-142, ghA64scan1.gpr
Sample type RNA
 
Channel 1
Source name Xu-142
Organism Gossypium hirsutum
Characteristics Xu-142, Biological Repl: 1, Technical repl: 2
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name fl
Organism Gossypium hirsutum
Characteristics fl, Biological Repl: 1, Technical repl: 2
Extracted molecule total RNA
Label Cy3
 
 
Description 0 dpa ovule comparisons
Biological Replicate: 1, Technical Replicate: 2, Dye Swapped: true
Data processing Normalization Method: Spatial Normalization. Ref: Wilson DL, Buckley MJ, Helliwell CA, Wilson IW (2003) New normalization methods for cDNA microarray data. Bioinformatics 19, 1325-32.
 
Submission date Nov 01, 2005
Last update date Nov 02, 2005
Contact name Andrew Spriggs
E-mail(s) [email protected]
Phone 612-6246-5193
Organization name CSIRO Plant Industry
Department Bioinformatics Group
Street address GPO Box 1600
City Canberra
State/province ACT
ZIP/Postal code 2601
Country Australia
 
Platform ID GPL3035
Series (1)
GSE3546 Cotton ovule development

Data table header descriptions
ID_REF
VALUE Normalized log2 ratio of medians defined as CH1 divided by CH2
BACK_TRANSFORM_VALUE Ratio of medians defined as CH1 divided by CH2 back transformed from normalised log
CH1_FG Channel 1 median feature pixel intensity (635nm)
CH1_BG Channel 1 median feature background intensity
CH2_FG Channel 2 median feature pixel intensity (532nm)
CH2_BG Channel 2 median feature background intensity
RATIO Unnormalized, untransformed ratio of medians (Ch1/Ch2 in unswapped sample, Ch2/Ch1 in swapped sample)
FLAG the type of flag associated with a feature. 0 denotes satisfactory features, <0 denotes un-satisfactory features that were excluded from normalisation and analysis

Data table
ID_REF VALUE BACK_TRANSFORM_VALUE CH1_FG CH1_BG CH2_FG CH2_BG RATIO FLAG
SP0000026113 0.2146599 1.1604303 50.0 31.0 108.0 96.0 2.16 0
SP0000026114 0.0563495 1.0398313 85.0 32.0 141.0 96.0 1.6588235 0
SP0000026115 -0.2557176 0.8375704 1306.0 31.0 1213.0 94.0 0.9287902 0
SP0000026116 -0.0148044 0.9897908 457.0 30.0 504.0 97.0 1.1028446 0
SP0000026117 0 1 972.0 31.0 988.0 97.0 1.0164609 0
SP0000026118 0.0725179 1.0515503 814.0 31.0 841.0 95.0 1.0331695 0
SP0000026119 -0.2468889 0.8427117 1305.0 31.0 1101.0 97.0 0.8436782 0
SP0000026120 0.0816797 1.0582494 1515.0 31.0 1575.0 97.0 1.039604 0
SP0000026121 -0.2417372 0.8457263 121.0 30.0 157.0 94.0 1.2975207 0
SP0000026122 0.1824534 1.134812 990.0 31.0 1229.0 97.0 1.2414141 0
SP0000026123 -0.0046666 0.9967706 93.0 31.0 146.0 95.0 1.5698925 0
SP0000026124 0.0781028 1.0556289 208.0 30.0 279.0 93.0 1.3413462 0
SP0000026125 0.3050206 1.2354363 3307.0 31.0 3946.0 99.0 1.1932265 0
SP0000026126 0.6480645 1.5670645 2406.0 32.0 3393.0 97.0 1.4102244 0
SP0000026127 -0.05365 0.9634956 210.0 31.0 242.0 94.0 1.152381 0
SP0000026128 -0.0227998 0.9843206 1063.0 31.0 1083.0 99.0 1.0188147 0
SP0000026129 -0.0924815 0.9379081 1460.0 32.0 1344.0 98.0 0.9205479 0
SP0000026130 0.2484482 1.1879287 2132.0 31.0 2242.0 94.0 1.0515947 0
SP0000026131 0.0981959 1.070434 1429.0 31.0 1482.0 99.0 1.0370889 0
SP0000026132 0.0482023 1.0339757 367.0 32.0 419.0 97.0 1.1416894 0

Total number of rows: 10584

Table truncated, full table size 693 Kbytes.




Supplementary data files not provided
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