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Sample GSM82292 Query DataSets for GSM82292
Status Public on Apr 30, 2007
Title 2037_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 23627.584 180.3321 G 183.8066 23736.584 11541 24887.1016 197 15.83755589 129.1389351 111.5525 109 13.426 227 180.3321
1002 1 1009.9397 7.7081 G 8.7378 1118.9397 1278 530.6245 118 12.25733566 128.0574742 110.4917 109 12.705 124 7.7081
1003 1 14.025 0.107 L 0.9409 124.025 124 17.5663 40 7.136496544 131.8176609 111.4309 110 14.5451 187 0.107
1004 1 17.7895 0.1358 L 0.9851 125.7895 125 23.5966 95 10.9980793 127.6937283 108.5615 108 13.1291 193 0.1358
1005 1 18.0333 0.1376 L 0.965 127.0333 126 19.8838 60 8.740387917 131.6341528 109.025 109 15.0894 124 0.1376
1006 1 36.5 0.2786 G 1.138 144.5 144 18.1281 58 8.59348011 126.9770984 108.9505 108 12.6514 188 0.2786
1007 1 35.1159 0.268 G 1.1326 141.1159 138 17.3025 69 9.373021126 124.5946477 107.0914 106 12.3964 181 0.268
1008 1 25362.0469 193.57 G 197.485 25471.0469 11441 26484.3164 218 16.66031837 128.9771113 110.3623 109 13.3181 215 193.57
1009 1 654.4153 4.9947 G 5.7418 765.4153 843 334.6216 120 12.36077404 133.3052907 112.4068 111 14.8702 122 4.9947
1010 1 707.2202 5.3977 G 6.2989 816.2202 919 341.0414 111 11.8882122 129.5812988 109.0667 109 13.7209 124 5.3977
1011 1 183.4433 1.4001 G 2.2323 293.4433 295 52.7304 97 11.11324596 131.4510524 110.8681 110 14.3007 188 1.4001
1012 1 95.0366 0.7253 G 1.5588 201.0366 199 29.4061 82 10.21790791 128.9696264 108.6575 106 15.3131 187 0.7253
1013 1 57.4026 0.4381 G 1.2012 170.4026 166 19.9683 77 9.90148735 141.8557889 115.116 113 19.2372 187 0.4381
1014 1 48.9367 0.3735 G 1.2234 156.9367 157 20.9305 79 10.02925301 128.2829333 108.1111 108 13.522 186 0.3735
1015 1 24266.8223 185.211 G 177.7109 24379.8223 9570 24790.832 166 14.53814888 137.1881151 115.0667 113 16.1254 124 185.211
1016 1 139.8588 1.0674 G 1.8689 251.8588 265 68.3262 85 10.40314198 134.7646536 111.8516 112 15.1764 188 1.0674
1017 1 35.0488 0.2675 L 0.9849 147.0488 151 17.7955 41 7.225152016 149.3015452 114.2198 112 24.8677 188 0.2675
1018 1 16.2041 0.1237 L 0.973 123.2041 125 18.1006 49 7.898653984 126.6284833 107.125 107 13.0857 148 0.1237
1019 1 14.2 0.1084 L 0.948 122.2 121 18.4078 90 10.70474434 128.9062634 109.0798 108 13.9375 194 0.1084
1020 1 23.9216 0.1826 G 1.03 132.9216 134 14.4885 51 8.058238983 129.0544029 110.7356 109 13.3696 180 0.1826

Total number of rows: 54359

Table truncated, full table size 6030 Kbytes.




Supplementary file Size Download File type/resource
GSM82292.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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