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Sample GSM82293 Query DataSets for GSM82293
Status Public on Apr 30, 2007
Title 1988_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 15236.7783 178.1537 G 164.8932 15314.7783 6709 15909.001 151 13.86575508 92.87697011 79.0167 78 9.918 124 178.1537
1002 1 730.4333 8.5405 G 8.7998 809.4333 949 424.4898 90 10.70474434 91.98263546 79.4011 79 8.6551 188 8.5405
1003 1 7.5882 0.0887 L 0.9307 86.5882 89 11.3218 34 6.579524517 93.04049268 79.6374 79 9.3603 188 0.0887
1004 1 8.1765 0.0956 L 0.9423 86.1765 85 9.3289 34 6.579524517 91.45078316 77.4341 78 8.9672 188 0.0956
1005 1 7.6078 0.089 L 0.9342 86.6078 86 11.3812 51 8.058238983 92.70879401 78.4083 79 9.1392 124 0.089
1006 1 21.8667 0.2557 G 1.0942 100.8667 101 9.8039 45 7.569397449 92.18553706 78.3646 79 8.7904 187 0.2557
1007 1 27.5192 0.3218 G 1.1536 106.5192 105 11.5317 52 8.136857986 92.33720912 79.6264 79 8.8915 188 0.3218
1008 1 18430.6152 215.4972 G 194.9875 18511.6152 9044 18559.459 163 14.40618038 94.93744442 80.625 81 9.2916 124 215.4972
1009 1 347.8445 4.0671 G 4.6864 425.8445 466 156.9446 90 10.70474434 90.86742019 78.5138 78 8.5783 187 4.0671
1010 1 565.5117 6.6122 G 7.0891 642.5117 749 289.7995 86 10.46415806 90.63334075 77.7857 77 9.0889 188 6.6122
1011 1 117.7805 1.3771 G 2.1654 195.7805 205 44.6206 82 10.21790791 90.41310041 78.2253 78 8.2754 188 1.3771
1012 1 51.2656 0.5994 G 1.4036 131.2656 133 19.2104 64 9.027033806 93.52274565 79.8297 80 9.0152 188 0.5994
1013 1 29.1333 0.3406 G 1.1733 108.1333 107 12.4076 60 8.740387917 92.16211723 78.6778 79 8.7747 186 0.3406
1014 1 22.6825 0.2652 G 1.1016 101.6825 102 8.9953 63 8.956232071 92.30544714 79.1333 79 8.8703 186 0.2652
1015 1 15817.54 184.9442 G 165.8551 15899.54 10454 15813.4629 126 12.66602516 95.86404795 81.1099 82 9.2427 188 184.9442
1016 1 37.4407 0.4378 G 1.2376 118.4407 121 15.3626 59 8.667244911 95.69834315 81.0061 81 9.7989 169 0.4378
1017 1 22.88 0.2675 G 1.0996 102.88 103 11.4937 50 7.978845596 93.56172215 79.4128 80 9.0412 178 0.2675
1018 1 5.8511 0.0684 L 0.9297 83.8511 83 11.8123 94 10.94004154 90.18975445 78.4247 78 8.1265 192 0.0684
1019 1 8.1607 0.0954 L 0.941 85.1607 87 10.0032 56 8.444016457 90.49567096 77.0256 77 8.9971 121 0.0954
1020 1 15.5294 0.1816 G 1.0074 96.5294 95 11.4178 34 6.579524517 95.82319484 81.5233 81 9.8821 178 0.1816

Total number of rows: 54359

Table truncated, full table size 5812 Kbytes.




Supplementary file Size Download File type/resource
GSM82293.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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