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Sample GSM82296 Query DataSets for GSM82296
Status Public on Apr 30, 2007
Title 1842_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 10286.6299 103.8679 G 103.0813 10371.6299 5716 10549.0283 204 16.11647797 100.6160112 85.1667 85 10.4107 230 103.8679
1002 1 682.6496 6.893 G 7.5214 769.6496 852 375.2433 119 12.30916309 102.3274908 86.0795 87 10.2183 90 6.893
1003 1 -1.3519 -0.0137 L 0.8289 87.6481 87 14.4673 54 8.291859627 105.7347374 87.7875 89 11.1565 82 -0.0137
1004 1 0.2414 0.0024 L 0.6452 88.2414 89 9.8913 29 6.076507568 136.7715256 91.6099 88 32.5144 188 0.0024
1005 1 68.9524 0.6962 G 1.5381 154.9524 100 150.3084 42 7.312732697 100.7401508 85.5805 86 9.8268 180 0.6962
1006 1 23.8772 0.2411 G 1.0841 109.8772 110 11.9356 57 8.519076347 101.3523562 86.7706 86 10.2349 176 0.2411
1007 1 42.3108 0.4272 G 1.2119 129.3108 129 14.6895 74 9.706685066 106.6995135 88.2022 87 13.133 184 0.4272
1008 1 9833.5215 99.2927 G 98.0196 9919.5215 5606 9854.9443 192 15.63528061 101.1993357 84.9838 86 10.1329 191 99.2927
1009 1 226.8542 2.2906 G 3.0091 310.8542 336 97.8356 96 11.05581284 103.3043849 85.8562 84 12.8696 159 2.2906
1010 1 404.625 4.0856 G 5.0627 486.625 556 193.1646 88 10.58513451 96.12057774 82.3522 82 9.4137 165 4.0856
1011 1 216.4945 2.186 G 3.0319 299.4945 311 94.3944 91 10.76405144 98.78159022 83.3626 83 10.5211 188 2.186
1012 1 25.9636 0.2622 G 1.112 111.9636 113 13.5095 55 8.368284225 100.6900616 85.1868 86 9.7934 188 0.2622
1013 1 15.6139 0.1577 G 1.0234 96.6139 96 14.0564 103 11.45179749 94.40741098 82 81 8.9383 213 0.1577
1014 1 20.84 0.2104 G 1.0739 101.84 101 14.7219 50 7.978845596 94.82770843 81.4233 81 9.2185 169 0.2104
1015 1 9741.5137 98.3636 G 102.3069 9823.5137 4544 9623.2979 179 15.09668446 96.02006448 81.825 82 9.3467 124 98.3636
1016 1 52.2933 0.528 G 1.4046 133.2933 135 18.274 75 9.772049904 94.89844947 81.5495 81 9.2656 188 0.528
1017 1 39.5846 0.3997 G 1.2402 120.5846 120 16.299 65 9.097283363 97.2284878 83.2198 81 10.819 188 0.3997
1018 1 8.6923 0.0878 L 0.9564 92.6923 93 9.7643 39 7.04672575 96.92239434 83.6484 84 8.6149 188 0.0878
1019 1 10.5789 0.1068 L 0.957 91.5789 92 12.5208 57 8.519076347 95.69639045 81.9153 81 9.7976 122 0.1068
1020 1 40.2535 0.4065 G 1.2713 121.2535 122 15.4708 71 9.507891655 95.38010209 81.2889 81 9.5867 186 0.4065

Total number of rows: 54359

Table truncated, full table size 5830 Kbytes.




Supplementary file Size Download File type/resource
GSM82296.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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