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Sample GSM82305 Query DataSets for GSM82305
Status Public on Apr 30, 2007
Title 2030_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 10654.54 93.6984 G 118.3931 10731.54 8113 10057.4043 178 15.05445576 90.64328602 78.4279 77 9.0955 223 93.6984
1002 1 911.5619 8.0165 G 10.8545 989.5619 1075 491.1466 107 11.67204475 91.16588332 77.7556 78 8.7773 186 8.0165
1003 1 -0.069 -0.0006 L 0.8571 80.931 79 10.4714 29 6.076507568 94.42769216 80.5064 81 8.9518 162 -0.0006
1004 1 18.1282 0.1594 G 1.0285 97.1282 89 30.286 39 7.04672575 94.43844605 78.9663 79 10.2923 184 0.1594
1005 1 12.0682 0.1061 L 0.9966 90.0682 91 12.0178 44 7.484820843 90.37719808 77.3333 78 8.2515 183 0.1061
1006 1 24.25 0.2133 G 1.125 102.25 102 12.6145 64 9.027033806 90.88633676 77.9011 78 8.5909 188 0.2133
1007 1 12.6591 0.1113 L 0.9935 88.6591 91 11.9334 44 7.484820843 89.23633774 76.6429 76 8.8242 188 0.1113
1008 1 10606.8018 93.2786 G 114.8838 10684.8018 5128 10721.8271 184 15.30607986 93.00531045 78.8018 78 10.0035 235 93.2786
1009 1 460.5052 4.0498 G 5.6585 541.5052 561 202.4171 95 10.9980793 95.69703475 79.4254 81 9.798 187 4.0498
1010 1 592.8913 5.214 G 7.3117 669.8913 741 318.1986 92 10.82303238 91.61869677 78.4211 77 9.7458 177 5.214
1011 1 140.5682 1.2362 G 2.3745 218.5682 218 57.3609 88 10.58513451 92.04849884 77.8077 78 9.3657 188 1.2362
1012 1 36.6479 0.3223 G 1.2691 112.6479 112 16.0238 71 9.507891655 88.76034605 77.3791 76 8.5069 188 0.3223
1013 1 22.7206 0.1998 G 1.1074 99.7206 99 11.8431 68 9.304853439 90.0506952 77.1648 77 8.7005 188 0.1998
1014 1 83.8395 0.7373 G 1.7967 160.8395 167 28.7271 81 10.15541267 89.51719761 77.1538 77 8.3448 188 0.7373
1015 1 10592.918 93.1565 G 118.5841 10670.918 4207 11056.8008 197 15.83755589 89.98605487 77.9427 78 7.9907 235 93.1565
1016 1 137.4471 1.2087 G 2.3872 213.4471 217 46.6707 85 10.40314198 89.4132356 76.779 76 8.9422 187 1.2087
1017 1 44.3671 0.3902 G 1.3289 121.3671 119 18.3973 79 10.02925301 91.32780678 77.4725 77 9.5519 188 0.3902
1018 1 6.0341 0.0531 L 0.9111 82.0341 80 12.6027 88 10.58513451 90.04163088 76.4551 76 9.3611 184 0.0531
1019 1 6.8947 0.0606 L 0.9242 82.8947 83 12.0098 57 8.519076347 89.690341 76.5254 76 9.1269 122 0.0606
1020 1 31.1343 0.2738 G 1.1667 110.1343 111 12.9936 67 9.236181259 94.39845639 79.1667 79 10.2656 186 0.2738

Total number of rows: 54359

Table truncated, full table size 5840 Kbytes.




Supplementary file Size Download File type/resource
GSM82305.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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