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Sample GSM82310 Query DataSets for GSM82310
Status Public on Apr 30, 2007
Title 2314_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 10452.1006 88.4638 G 114.3508 10531.1006 6788 10128.5928 202 16.03728104 92.09470099 79.6762 79 8.7298 218 88.4638
1002 1 860.5856 7.2838 G 9.8051 940.5856 1038 476.0859 113 11.9948349 95.92798812 80.5508 80 10.6187 122 7.2838
1003 1 9.1515 0.0775 L 0.9129 95.1515 92 14.724 33 6.482044697 104.2301542 85.3333 86 12.1534 95 0.0775
1004 1 6.8588 0.0581 L 0.925 85.8588 86 11.6883 85 10.40314198 92.82429261 80.5379 79 9.2162 151 0.0581
1005 1 12.8333 0.1086 G 1.0095 91.8333 91 11.1243 36 6.770275116 90.96744023 79.3407 79 7.9783 188 0.1086
1006 1 22.1429 0.1874 G 1.0935 100.1429 102 12.901 70 9.44069767 91.57831073 78.4716 78 9.0522 182 0.1874
1007 1 31.6282 0.2677 G 1.1948 109.6282 111 16.0273 78 9.965575218 91.75450213 78.8177 78 9.1697 187 0.2677
1008 1 10753.1113 91.0115 G 112.3381 10834.1113 7880 10274.8877 199 15.91774654 96.44197272 80.7212 81 10.2947 234 91.0115
1009 1 582.6087 4.931 G 7.0542 662.6087 704 306.6073 117 12.20528698 93.93048573 79.6379 80 9.287 120 4.931
1010 1 439.8248 3.7226 G 5.5011 519.8248 540 226.5984 97 11.11324596 94.49532487 80.5934 80 9.6635 188 3.7226
1011 1 81.8111 0.6924 G 1.729 161.8111 160 30.3234 90 10.70474434 93.58709995 80.1319 80 9.0581 188 0.6924
1012 1 46.4416 0.3931 G 1.3314 124.4416 122 21.0605 77 9.90148735 93.46473502 78.4615 78 10.3098 188 0.3931
1013 1 23.3836 0.1979 G 1.1055 103.3836 102 11.4397 73 9.640875816 93.51868904 79.2809 80 9.0125 184 0.1979
1014 1 74.6071 0.6315 G 1.652 153.6071 155 23.3202 84 10.34176636 92.98020252 79.522 79 9.3201 188 0.6315
1015 1 10498.2139 88.8541 G 111.163 10578.2139 6862 10149.9121 205 16.15593147 95.1594836 79.9167 80 10.1063 236 88.8541
1016 1 30.4474 0.2577 G 1.1625 108.4474 108 13.4657 76 9.836981773 93.2898906 78.8077 78 10.1933 188 0.2577
1017 1 44.1294 0.3735 G 1.3274 123.1294 123 18.375 85 10.40314198 92.76332304 79.2802 79 9.1755 188 0.3735
1018 1 4.3333 0.0367 L 0.9022 83.3333 84 10.4535 57 8.519076347 92.36825173 77.8 79 8.9122 124 0.0367
1019 1 6.0571 0.0513 L 0.8959 85.0571 85 8.6881 35 6.675580978 94.94381635 80.1593 79 10.6292 188 0.0513
1020 1 23.3889 0.198 G 1.1105 104.3889 102 16.9503 54 8.291859627 94.0051913 81.3933 81 8.6701 184 0.198

Total number of rows: 54359

Table truncated, full table size 5842 Kbytes.




Supplementary file Size Download File type/resource
GSM82310.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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