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Sample GSM82313 Query DataSets for GSM82313
Status Public on Apr 30, 2007
Title 275_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 10359.1396 109.2886 G 110.1226 10439.1396 7969 9809.0527 195 15.75695801 94.79559204 80.2333 80 9.8637 218 109.2886
1002 1 881.6752 9.3016 G 9.8673 962.6752 992 495.6086 119 12.30916309 97.56216347 82.521 81 11.0414 123 9.3016
1003 1 6.0233 0.0635 L 0.8897 87.0233 86 10.8927 86 10.46415806 97.80882859 81.375 81 11.2059 166 0.0635
1004 1 6.6818 0.0705 L 0.9065 86.6818 86 11.8969 88 10.58513451 95.62032955 81.0859 80 10.4136 206 0.0705
1005 1 7 0.0738 L 0.9272 87 87 9.672 31 6.282549381 93.8294572 79.3957 80 9.2196 143 0.0738
1006 1 19.9649 0.2106 G 1.0403 98.9649 102 12.7815 57 8.519076347 95.13071265 79.1563 79 10.7538 166 0.2106
1007 1 27.1765 0.2867 G 1.0771 108.1765 109 13.8924 68 9.304853439 100.4334075 81.3757 81 12.9556 187 0.2867
1008 1 10140.2031 106.9788 G 105.1793 10221.2031 5081 10143.4678 201 15.99753571 97.17881345 81.8154 81 10.7859 203 106.9788
1009 1 173.5532 1.831 G 2.5805 255.5532 246 71.6899 94 10.94004154 99.03098204 82.2849 82 11.354 178 1.831
1010 1 393.1758 4.148 G 4.5344 474.1758 485 166.1028 91 10.76405144 104.5740012 82.9607 81 15.716 184 4.148
1011 1 107.9438 1.1388 G 2.0377 184.9438 179 48.0829 89 10.64510822 90.76175558 78.2198 77 9.1745 188 1.1388
1012 1 58.9474 0.6219 G 1.487 135.9474 138 22.4885 76 9.836981773 91.42384237 78.4341 77 9.6159 188 0.6219
1013 1 32.8947 0.347 G 1.1598 110.8947 109 16.0637 76 9.836981773 95.61236563 79.7582 78 11.7416 188 0.347
1014 1 19.1129 0.2016 G 1.056 96.1129 95 12.6135 62 8.884866714 91.01312728 76.989 77 9.3421 188 0.2016
1015 1 10098.3389 106.5372 G 109.8103 10177.3389 5442 9915.0771 202 16.03728104 92.68105425 79.6667 79 9.1207 236 106.5372
1016 1 27.137 0.2863 G 1.1333 105.137 105 12.0197 73 9.640875816 92.77454551 78.1044 78 9.8497 188 0.2863
1017 1 35.9744 0.3795 G 1.2571 112.9744 111 15.7236 78 9.965575218 89.87062466 77.4945 77 8.5804 188 0.3795
1018 1 13 0.1371 L 0.9914 92 95 13.3366 44 7.484820843 92.80004925 78.6264 79 9.2 188 0.1371
1019 1 27.4627 0.2897 G 1.1256 108.4627 94 65.5563 67 9.236181259 96.36122187 79.225 81 10.2408 124 0.2897
1020 1 15.381 0.1623 G 1.0104 97.381 98 12.9962 42 7.312732697 96.37840325 83.1492 82 9.5856 187 0.1623

Total number of rows: 54359

Table truncated, full table size 5828 Kbytes.




Supplementary file Size Download File type/resource
GSM82313.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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