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Sample GSM82314 Query DataSets for GSM82314
Status Public on Apr 30, 2007
Title 275_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 9871.3867 98.5641 G 98.832 9955.3867 4782 10313.4639 191 15.59451008 100.7303508 85.1476 84 11.1536 218 98.5641
1002 1 927.2451 9.2584 G 9.8692 1011.2451 1058 458.3846 104 11.5072546 102.464872 85.7222 84 12.3099 186 9.2584
1003 1 14.2778 0.1426 L 0.9797 100.2778 96 23.0502 36 6.770275116 102.359393 86.5966 86 10.9063 123 0.1426
1004 1 5.5862 0.0558 L 0.7732 89.5862 89 9.4851 29 6.076507568 115.8580209 85.7637 84 21.2387 188 0.0558
1005 1 8.7222 0.0871 L 0.9484 90.7222 91 8.5427 36 6.770275116 95.6630755 82.4535 82 9.1087 178 0.0871
1006 1 24.4737 0.2444 G 1.1125 106.4737 104 12.4578 57 8.519076347 95.70572435 82.0833 82 9.1371 186 0.2444
1007 1 21.8909 0.2186 G 1.071 104.8909 103 13.2111 55 8.368284225 97.93308388 83.2303 83 9.9554 184 0.2186
1008 1 10796.1396 107.7977 G 112.0415 10878.1396 7447 10520.7383 181 15.18078899 97.0902284 82.7189 82 10.0602 225 107.7977
1009 1 167.2135 1.6696 G 2.635 248.2135 252 61.6996 89 10.64510822 94.20024347 82.0879 81 8.8002 188 1.6696
1010 1 343.8202 3.433 G 4.4754 424.8202 436 157.9162 89 10.64510822 94.92315595 81.5029 81 9.2821 179 3.433
1011 1 88.3636 0.8823 G 1.8298 166.3636 162 35.3789 88 10.58513451 90.92076613 79.1264 78 8.6138 188 0.8823
1012 1 36.4286 0.3637 G 1.2467 115.4286 118 16.7063 70 9.44069767 92.58579842 78.989 79 9.0572 188 0.3637
1013 1 37.8133 0.3776 G 1.2634 115.8133 113 15.7681 75 9.772049904 91.67084189 78.489 78 9.1139 188 0.3776
1014 1 22.4762 0.2244 G 1.1059 101.4762 104 12.0104 63 8.956232071 91.76213964 79.0495 79 8.5081 188 0.2244
1015 1 10581.7188 105.6567 G 113.8675 10660.7188 6003 10500.9063 187 15.43035316 93.62388748 80.0132 79 9.7493 236 105.6567
1016 1 36.1867 0.3613 G 1.258 115.1867 116 14.7374 75 9.772049904 91.56371868 79.9286 79 8.3758 188 0.3613
1017 1 40.9091 0.4085 G 1.2747 119.9091 116 15.6878 77 9.90148735 94.07144759 79.033 79 10.0476 188 0.4085
1018 1 15.4186 0.154 G 1.026 95.4186 97 14.2032 43 7.39927721 93.00395613 80.9505 80 8.6693 188 0.154
1019 1 15.7436 0.1572 G 1.0038 96.7436 98 11.5108 39 7.04672575 96.380433 81.8022 81 10.2536 188 0.1572
1020 1 19.78 0.1975 G 1.0458 101.78 103 14.1157 50 7.978845596 97.32278071 83.0618 82 10.2152 184 0.1975

Total number of rows: 54359

Table truncated, full table size 5828 Kbytes.




Supplementary file Size Download File type/resource
GSM82314.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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