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Sample GSM82316 Query DataSets for GSM82316
Status Public on Apr 30, 2007
Title 445_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11493.1445 89.1504 G 124.1076 11572.1445 8610 10812.8945 196 15.79730797 93.24284896 79.5068 79 9.4952 229 89.1504
1002 1 1147.0526 8.8975 G 12.7055 1228.0526 1210 633.9564 116 12.15301514 96.65488099 81.4867 81 10.4366 117 8.8975
1003 1 6.2234 0.0483 L 0.8948 89.2234 87 14.3684 94 10.94004154 99.71211972 83.8828 83 11.1414 149 0.0483
1004 1 11.3061 0.0877 L 0.9612 93.3061 91 17.517 100 11.28379154 97.07422787 83.0886 82 10.0495 164 0.0877
1005 1 26.2045 0.2033 G 1.103 110.2045 103 32.8589 44 7.484820843 99.91440411 83.5174 84 10.6096 178 0.2033
1006 1 24.3913 0.1892 G 1.0562 107.3913 106 13.9401 46 7.653039932 101.6800577 84.3333 83 12.4534 168 0.1892
1007 1 30.5 0.2366 G 1.1842 111.5 112 18.6949 72 9.574614525 94.15343148 81.5856 81 8.769 187 0.2366
1008 1 11194.9541 86.8374 G 118.1722 11276.9541 6199 11104.502 201 15.99753571 95.42814477 82.129 82 8.9521 225 86.8374
1009 1 426.4091 3.3076 G 5.3347 506.4091 561 227.6362 112 11.94164276 94.92781819 80.2917 80 9.9519 124 3.3076
1010 1 637.2525 4.9431 G 7.3396 720.2525 745 319.9205 99 11.22723103 98.13268386 82.9066 83 10.0885 188 4.9431
1011 1 95.618 0.7417 G 1.9098 174.618 172 40.7499 89 10.64510822 91.43188486 79.6044 79 8.2879 188 0.7417
1012 1 41.6027 0.3227 G 1.2943 121.6027 118 17.5458 73 9.640875816 93.95134759 79.6703 80 9.3009 188 0.3227
1013 1 24.8438 0.1927 G 1.1125 103.8438 105 12.3405 64 9.027033806 93.34488114 80.0165 79 9.5633 188 0.1927
1014 1 20.0385 0.1554 G 1.0591 99.0385 98 14.4608 52 8.136857986 93.50974565 79.9176 79 9.6732 188 0.1554
1015 1 11977.4336 92.907 G 123.2502 12058.4336 8732 11118.8096 191 15.59451008 97.83701983 81.5991 81 11.2247 235 92.907
1016 1 64.4198 0.4997 G 1.5139 144.4198 141 25.8724 81 10.15541267 95.39739447 80.5912 80 10.2649 187 0.4997
1017 1 31.0133 0.2406 G 1.1692 112.0133 109 16.2706 75 9.772049904 95.80649216 80.4835 81 9.871 188 0.2406
1018 1 13.375 0.1037 L 0.9949 91.375 92 11.9646 48 7.817640305 91.8459501 78.5385 78 9.2306 188 0.1037
1019 1 5.5536 0.0431 L 0.912 88.5536 88 14.1218 56 8.444016457 97.09903526 82.3421 83 9.3994 118 0.0431
1020 1 40.7778 0.3163 G 1.2572 124.7778 124 16.3233 72 9.574614525 99.25082191 83.9944 84 10.1672 186 0.3163

Total number of rows: 54359

Table truncated, full table size 5853 Kbytes.




Supplementary file Size Download File type/resource
GSM82316.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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