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Sample GSM82318 Query DataSets for GSM82318
Status Public on Apr 30, 2007
Title 1581_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 10235.8408 104.3954 G 105.934 10318.8408 4192 10835.3154 197 15.83755589 97.40821406 82.0177 83 9.6055 234 104.3954
1002 1 815.3019 8.3153 G 9.7666 894.3019 977 457.1317 108 11.72646046 91.56734682 78.0549 79 8.3782 188 8.3153
1003 1 11.275 0.115 L 0.9719 94.275 94 17.319 40 7.136496544 96.99603571 83.2222 83 9.3307 186 0.115
1004 1 11.5444 0.1177 L 0.9772 93.5444 90 21.044 90 10.70474434 95.73188404 81.948 82 9.1546 179 0.1177
1005 1 8.1556 0.0832 L 0.9318 89.1556 86 19.8309 90 10.70474434 95.67725967 81.0833 81 9.7848 148 0.0832
1006 1 19.8958 0.2029 G 1.0695 100.8958 100 14.3007 48 7.817640305 94.342499 81.1111 81 8.895 186 0.2029
1007 1 32.0541 0.3269 G 1.2046 112.0541 111 18.2326 74 9.706685066 93.02550682 80.022 80 8.6837 188 0.3269
1008 1 11251.1348 114.7504 G 119.049 11331.1348 7411 11305.1211 188 15.47155571 95.18039456 79.8833 80 10.1203 124 114.7504
1009 1 534.9 5.4554 G 6.6454 614.9 679 272.1049 102 11.39607143 92.53057927 80.105 80 8.3537 187 5.4554
1010 1 707.5729 7.2165 G 8.7436 785.5729 812 413.2551 96 11.05581284 89.84521631 78.4835 78 7.8968 188 7.2165
1011 1 44.9625 0.4586 G 1.3485 123.9625 122 20.5842 80 10.09253025 91.92452427 78.6404 79 8.6164 184 0.4586
1012 1 78.8734 0.8044 G 1.728 157.8734 156 35.8723 79 10.02925301 91.35981512 78.9945 79 8.2399 188 0.8044
1013 1 32.4853 0.3313 G 1.1936 109.4853 108 15.1914 68 9.304853439 91.72679228 78.1648 77 9.8179 188 0.3313
1014 1 123.9888 1.2646 G 2.2036 202.9888 204 49.1424 89 10.64510822 92.11840367 80.2527 79 8.7456 188 1.2646
1015 1 10371.04 105.7743 G 112.2211 10451.04 4874 11060.3105 206 16.1952877 93.1290173 80.5175 80 8.7527 236 105.7743
1016 1 117.1928 1.1952 G 2.1209 197.1928 202 44.3552 83 10.28002357 92.97653111 79.9231 80 8.651 188 1.1952
1017 1 29.7941 0.3039 G 1.1824 107.7941 105 13.2238 68 9.304853439 91.16479402 78.1484 78 8.7765 188 0.3039
1018 1 4.907 0.05 L 0.9081 83.907 83 10.7732 86 10.46415806 92.39924073 79.095 79 8.9328 185 0.05
1019 1 10.6211 0.1083 L 0.9736 88.6211 89 9.7949 95 10.9980793 91.02409997 79.4813 78 8.6827 222 0.1083
1020 1 37.3562 0.381 G 1.2297 120.3562 121 18.3918 73 9.640875816 97.87522928 83.686 83 9.9168 178 0.381

Total number of rows: 54359

Table truncated, full table size 5827 Kbytes.




Supplementary file Size Download File type/resource
GSM82318.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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