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Sample GSM82325 Query DataSets for GSM82325
Status Public on Apr 30, 2007
Title 1687_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 18471.0352 326.6622 G 184.9044 18554.0352 8457 19625.0137 170 14.71226406 100.3439085 83.5378 83 11.5626 123 326.6622
1002 1 753.33 13.3227 G 8.8975 830.33 979 423.2883 102 11.39607143 93.32152105 78.0829 77 10.881 187 13.3227
1003 1 12.9211 0.2285 L 0.9742 90.9211 93 10.8855 38 6.955796242 93.32726929 78.6345 78 10.2182 151 0.2285
1004 1 13.3333 0.2358 L 0.9713 94.3333 96 18.5408 39 7.04672575 97.12208805 81.6923 81 10.7481 188 0.2358
1005 1 13.2222 0.2338 L 0.9319 90.2222 90 12.9746 36 6.770275116 96.8138516 80.2088 77 13.2092 188 0.2338
1006 1 20.3404 0.3597 G 1.0508 97.3404 96 12.4905 47 7.735777855 92.63677553 77.7207 77 10.4245 185 0.3597
1007 1 15.2308 0.2694 L 0.991 94.2308 93 11.7309 39 7.04672575 95.08549323 78.5165 79 10.7237 188 0.2694
1008 1 18187.3926 321.6459 G 173.9991 18270.3926 6393 19547.4375 147 13.68087006 105.0027811 84.1333 83 14.6685 124 321.6459
1009 1 248.8313 4.4006 G 3.4609 327.8313 359 119.6827 83 10.28002357 94.72553784 80.0659 79 10.4837 188 4.4006
1010 1 384.1566 6.7938 G 4.9999 461.1566 527 224.039 83 10.28002357 92.23310884 77.0714 77 10.1554 188 6.7938
1011 1 42.6615 0.7545 G 1.3108 118.6615 116 18.6591 65 9.097283363 90.52812073 76.9231 76 9.6854 188 0.7545
1012 1 15.25 0.2697 L 0.9693 92.25 94 16.785 40 7.136496544 95.17517652 78.6264 77 12.1168 188 0.2697
1013 1 28.75 0.5084 G 1.1175 106.75 105 11.8172 48 7.817640305 95.52829955 78.3222 78 11.6855 186 0.5084
1014 1 2.9059 0.0514 L 0.8596 80.9059 80 11.421 85 10.40314198 94.1185252 78.5398 78 10.7457 234 0.0514
1015 1 18422.1113 325.797 G 177.4107 18506.1113 8702 20066.75 156 14.0934515 104.3122851 84.4167 84 13.5415 112 325.797
1016 1 60.4762 1.0695 G 1.4925 137.4762 135 23.7091 63 8.956232071 92.11051883 78.5896 77 10.0737 179 1.0695
1017 1 13.7692 0.2435 L 0.9384 90.7692 90 14.8267 52 8.136857986 96.73035768 78.8167 77 13.1536 124 0.2435
1018 1 6.95 0.1229 L 0.9226 84.95 85 12.9247 40 7.136496544 92.07337836 77.9725 78 9.3823 188 0.1229
1019 1 6.3818 0.1129 L 0.8916 87.3818 89 13.4901 55 8.368284225 98.00127293 80.3529 81 11.3342 106 0.1129
1020 1 20.1176 0.3558 L 0.9406 101.1176 101 17.6181 34 6.579524517 107.504123 82.8193 81 17.6694 172 0.3558

Total number of rows: 54359

Table truncated, full table size 5812 Kbytes.




Supplementary file Size Download File type/resource
GSM82325.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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