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Sample GSM82340 Query DataSets for GSM82340
Status Public on Apr 30, 2007
Title 1584_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 15591.1035 175.2792 G 165.6217 15668.1035 6323 16890.1543 207 16.23454857 94.60175284 78.9315 77 11.7345 227 175.2792
1002 1 706.6121 7.9439 G 8.4788 784.6121 968 374.0928 118 12.25733566 92.5379584 77.0824 78 9.692 87 7.9439
1003 1 16.4211 0.1846 L 0.9937 97.4211 87 45.6478 95 10.9980793 98.04106792 81.1905 81 11.3607 153 0.1846
1004 1 14.029 0.1577 L 0.9922 89.029 90 11.9988 69 9.373021126 89.72828557 74.7 75 9.8189 124 0.1577
1005 1 7.5 0.0843 L 0.9085 83.5 83 13.0157 38 6.955796242 91.91028847 77 76 10.6069 188 0.0843
1006 1 48.2545 0.5425 G 1.3482 125.2545 108 63.0945 55 8.368284225 92.90694418 77.0773 77 10.6046 187 0.5425
1007 1 27.9048 0.3137 G 1.1424 106.9048 97 29.64 63 8.956232071 93.57781727 80.022 79 9.7185 188 0.3137
1008 1 16706.5742 187.8196 G 171.3905 16785.5742 8302 17514.5664 201 15.99753571 97.93757209 81.5929 79 12.625 234 187.8196
1009 1 493.9445 5.5531 G 6.1547 570.9445 573 300.865 110 11.83454037 92.76513183 77.6374 77 10.5101 188 5.5531
1010 1 603.1373 6.7806 G 7.312 679.1373 775 302.0769 104 11.5072546 92.88024381 77.3403 76 11.2535 150 6.7806
1011 1 97.3781 1.0947 G 1.9168 173.3781 172 34.7319 82 10.21790791 90.45385142 76.0904 76 9.6359 183 1.0947
1012 1 64.1818 0.7215 G 1.4925 140.1818 139 23.4575 77 9.90148735 93.92205781 77.6813 76 11.948 188 0.7215
1013 1 74.4368 0.8368 G 1.61 150.4368 108 167.879 87 10.52482033 93.44090427 76.7 76 11.6273 124 0.8368
1014 1 46.1972 0.5194 G 1.321 123.1972 113 34.8553 71 9.507891655 93.25734978 77.8352 77 10.8382 188 0.5194
1015 1 17747.9727 199.5273 G 163.1339 17830.9727 12756 17044.5723 219 16.69848633 109.3027044 85.9086 83 17.5351 192 199.5273
1016 1 268.6697 3.0205 G 2.9311 351.6697 360 85.5881 111 11.8882122 119.9781968 86.7083 83 24.6521 98 3.0205
1017 1 58.0326 0.6524 G 1.4121 138.0326 109 108.5164 92 10.82303238 97.74927406 81.0167 80 11.8329 124 0.6524
1018 1 10 0.1124 L 0.8797 85 81 17.2825 35 6.675580978 96.62587804 78.8639 75 14.4173 175 0.1124
1019 1 3.8118 0.0429 L 0.8723 80.8118 79 12.9283 85 10.40314198 92.63973926 77.3941 77 10.4265 211 0.0429
1020 1 49.0976 0.552 G 1.3479 127.0976 125 15.7105 82 10.21790791 94.29512985 79.3257 78 10.8634 181 0.552

Total number of rows: 54359

Table truncated, full table size 5858 Kbytes.




Supplementary file Size Download File type/resource
GSM82340.TXT.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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